Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23340

Experiment: L-Valine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (N)
5,711,311	-		CA265_RS23335	0.71	-0.0
5,711,311	-		CA265_RS23335	0.71	-0.0
5,711,364	+		CA265_RS23335	0.72	+0.2
5,711,445	+		CA265_RS23335	0.75	+0.7
5,711,446	-		CA265_RS23335	0.75	-0.4
5,711,506	+		CA265_RS23335	0.77	+0.7
5,711,508	+		CA265_RS23335	0.77	-0.8
5,711,531	-		CA265_RS23335	0.77	+0.2
5,711,540	+		CA265_RS23335	0.78	+1.4
5,711,574	-		CA265_RS23335	0.79	+1.2
5,711,574	-		CA265_RS23335	0.79	+0.6
5,711,634	-		CA265_RS23335	0.81	+0.2
5,711,644	-		CA265_RS23335	0.81	+0.0
5,711,709	+		CA265_RS23335	0.83	-1.2
5,711,710	-		CA265_RS23335	0.83	-0.8
5,711,710	-		CA265_RS23335	0.83	+0.6
5,711,724	+		CA265_RS23335	0.83	+0.0
5,711,724	+		CA265_RS23335	0.83	-0.6
5,711,776	-		CA265_RS23335	0.85	+1.3
5,711,776	-		CA265_RS23335	0.85	-0.4
5,711,820	-		CA265_RS23335	0.86	+0.4
5,711,877	+		CA265_RS23335	0.88	+1.9
5,711,877	+		CA265_RS23335	0.88	+0.5
5,711,877	+		CA265_RS23335	0.88	-1.6
5,711,878	-		CA265_RS23335	0.88	+1.7
5,711,899	-		CA265_RS23335	0.89	-0.1
5,711,935	-		CA265_RS23335	0.90	-0.3
5,711,935	-		CA265_RS23335	0.90	+5.0
5,711,946	-				-0.2
5,712,010	-				+0.2
5,712,010	-				-0.6
5,712,013	-				-0.5
5,712,098	+				+0.1
5,712,099	-				-1.0
5,712,136	-				-0.0
5,712,150	-				+0.2
5,712,156	-				-0.9
5,712,156	-				-0.6
5,712,160	-				+0.2
5,712,175	-				-0.3
5,712,197	+				+0.4
5,712,197	+				+0.4
5,712,203	+				+0.3
5,712,276	-				-0.5
5,712,277	+				-0.5
5,712,282	-				-1.1
5,712,282	-				+0.1
5,712,297	-				+0.7
5,712,409	-				+0.2
5,712,582	+				+0.5
5,712,582	+				-2.5
5,712,583	-				-1.6
5,712,612	-		CA265_RS23340	0.11	-0.5
5,712,612	-		CA265_RS23340	0.11	-0.0
5,712,629	+		CA265_RS23340	0.11	-1.6
5,712,646	+		CA265_RS23340	0.12	-1.3
5,712,676	-		CA265_RS23340	0.13	-0.9
5,712,696	+		CA265_RS23340	0.14	-0.1
5,712,696	+		CA265_RS23340	0.14	-0.5
5,712,715	-		CA265_RS23340	0.14	+0.8
5,712,715	-		CA265_RS23340	0.14	-1.3
5,712,715	-		CA265_RS23340	0.14	-1.1
5,712,741	+		CA265_RS23340	0.15	+0.5
5,712,757	+		CA265_RS23340	0.16	-0.2
5,712,808	+		CA265_RS23340	0.18	+0.1
5,712,809	-		CA265_RS23340	0.18	+1.3
5,712,815	-		CA265_RS23340	0.18	+0.2
5,712,836	-		CA265_RS23340	0.19	-0.1
5,712,836	-		CA265_RS23340	0.19	-1.3
5,712,836	-		CA265_RS23340	0.19	+0.4
5,712,866	+		CA265_RS23340	0.20	-1.6
5,712,900	+		CA265_RS23340	0.21	+0.1
5,712,913	-		CA265_RS23340	0.22	-1.3
5,712,913	-		CA265_RS23340	0.22	-0.0
5,713,045	-		CA265_RS23340	0.26	-1.1
5,713,111	-		CA265_RS23340	0.29	-0.2
5,713,115	-		CA265_RS23340	0.29	-0.1
5,713,127	+		CA265_RS23340	0.29	+1.2
5,713,179	+		CA265_RS23340	0.31	-1.1
5,713,179	+		CA265_RS23340	0.31	+0.9
5,713,213	+		CA265_RS23340	0.32	+0.1
5,713,222	+		CA265_RS23340	0.33	+0.4
5,713,262	-		CA265_RS23340	0.34	-1.0
5,713,398	-		CA265_RS23340	0.39	-1.1
5,713,508	-		CA265_RS23340	0.43	-0.2
5,713,513	-		CA265_RS23340	0.43	-0.5
5,713,688	+		CA265_RS23340	0.49	+0.5
5,713,689	-		CA265_RS23340	0.49	-0.4
5,713,689	-		CA265_RS23340	0.49	+0.7
5,713,689	-		CA265_RS23340	0.49	-0.4
5,713,690	+		CA265_RS23340	0.49	-0.9
5,713,691	-		CA265_RS23340	0.49	-0.6
5,713,825	+		CA265_RS23340	0.54	-1.0
5,713,852	+		CA265_RS23340	0.55	+0.2
5,713,852	+		CA265_RS23340	0.55	+2.3
5,713,853	-		CA265_RS23340	0.55	+0.2
5,713,853	-		CA265_RS23340	0.55	+0.1
5,713,892	+		CA265_RS23340	0.57	-1.4
5,713,892	+		CA265_RS23340	0.57	+1.4
5,713,892	+		CA265_RS23340	0.57	+0.3
5,713,902	-		CA265_RS23340	0.57	-0.4
5,713,929	-		CA265_RS23340	0.58	+0.5
5,713,939	-		CA265_RS23340	0.58	-0.2
5,713,967	-		CA265_RS23340	0.59	-0.3
5,714,001	+		CA265_RS23340	0.61	-0.6
5,714,252	+		CA265_RS23340	0.70	-0.7
5,714,253	-		CA265_RS23340	0.70	-0.3
5,714,395	+		CA265_RS23340	0.75	+0.0
5,714,428	+		CA265_RS23340	0.76	-0.8
5,714,428	+		CA265_RS23340	0.76	-1.6
5,714,444	-		CA265_RS23340	0.76	-0.4
5,714,473	-		CA265_RS23340	0.77	-0.4
5,714,478	+		CA265_RS23340	0.78	+0.3
5,714,478	+		CA265_RS23340	0.78	-0.4
5,714,500	+		CA265_RS23340	0.78	-0.1
5,714,501	-		CA265_RS23340	0.78	-0.2
5,714,501	-		CA265_RS23340	0.78	-0.5
5,714,525	+		CA265_RS23340	0.79	-1.1
5,714,548	-		CA265_RS23340	0.80	-0.2
5,714,552	-		CA265_RS23340	0.80	-1.1
5,714,623	-		CA265_RS23340	0.83	+0.9
5,714,659	+		CA265_RS23340	0.84	+0.2
5,714,667	+		CA265_RS23340	0.84	-0.3
5,714,711	-		CA265_RS23340	0.86	-0.5
5,714,762	-		CA265_RS23340	0.88	+0.5
5,714,774	-		CA265_RS23340	0.88	-0.1
5,714,828	-				+1.0
5,714,830	+				+0.7
5,714,832	+				+0.5
5,714,833	-				+0.7
5,714,867	-				-1.5
5,714,944	+				-2.0
5,715,015	-				-1.8
5,715,159	-				-0.4
5,715,159	-				-0.3
5,715,187	+				-0.8
5,715,192	-				+0.8
5,715,256	-		CA265_RS23345	0.13	+0.6
5,715,274	+		CA265_RS23345	0.14	-1.5
5,715,330	+		CA265_RS23345	0.19	-0.4
5,715,343	+		CA265_RS23345	0.21	-0.7
5,715,436	-		CA265_RS23345	0.29	-1.9
5,715,436	-		CA265_RS23345	0.29	-1.4
5,715,475	+		CA265_RS23345	0.33	+0.9
5,715,717	-		CA265_RS23345	0.55	-0.1
5,715,717	-		CA265_RS23345	0.55	-1.0
5,715,753	-		CA265_RS23345	0.58	+2.0
5,715,770	-				+0.1
5,715,873	+		CA265_RS23345	0.69	-0.5
5,715,915	+		CA265_RS23345	0.73	-0.3
5,715,915	+		CA265_RS23345	0.73	-0.7
5,715,931	-		CA265_RS23345	0.75	-0.5
5,715,931	-		CA265_RS23345	0.75	+1.4
5,715,931	-		CA265_RS23345	0.75	-0.1
5,715,953	+		CA265_RS23345	0.77	+0.1
5,715,953	+		CA265_RS23345	0.77	-0.9
5,715,954	-		CA265_RS23345	0.77	-0.8
5,716,052	+		CA265_RS23345	0.86	+1.6
5,716,052	+		CA265_RS23345	0.86	+0.1
5,716,056	+		CA265_RS23345	0.86	+0.8
5,716,057	-		CA265_RS23345	0.86	+0.3
5,716,058	+		CA265_RS23345	0.86	-1.0
5,716,059	-		CA265_RS23345	0.86	-1.6
5,716,086	-		CA265_RS23345	0.89	+0.0