Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23330 and CA265_RS23335 are separated by 101 nucleotides CA265_RS23335 and CA265_RS23340 are separated by 46 nucleotides
CA265_RS23330: CA265_RS23330 - DUF5107 domain-containing protein, at 5,705,603 to 5,708,920
_RS23330
CA265_RS23335: CA265_RS23335 - hypothetical protein, at 5,709,022 to 5,712,264
_RS23335
CA265_RS23340: CA265_RS23340 - glycoside hydrolase family 2, at 5,712,311 to 5,715,100
_RS23340
Position (kb) 5709
5710
5711
5712
5713 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5708.092 kb on - strand, within CA265_RS23330 at 5708.092 kb on - strand, within CA265_RS23330 at 5708.124 kb on + strand, within CA265_RS23330 at 5708.199 kb on - strand, within CA265_RS23330 at 5708.212 kb on + strand, within CA265_RS23330 at 5708.213 kb on - strand, within CA265_RS23330 at 5708.218 kb on - strand, within CA265_RS23330 at 5708.250 kb on + strand, within CA265_RS23330 at 5708.299 kb on + strand, within CA265_RS23330 at 5708.299 kb on + strand, within CA265_RS23330 at 5708.331 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.404 kb on - strand, within CA265_RS23330 at 5708.404 kb on - strand, within CA265_RS23330 at 5708.436 kb on - strand, within CA265_RS23330 at 5708.463 kb on - strand, within CA265_RS23330 at 5708.476 kb on - strand, within CA265_RS23330 at 5708.490 kb on + strand, within CA265_RS23330 at 5708.491 kb on - strand, within CA265_RS23330 at 5708.491 kb on - strand, within CA265_RS23330 at 5708.517 kb on - strand, within CA265_RS23330 at 5708.560 kb on + strand, within CA265_RS23330 at 5708.562 kb on + strand, within CA265_RS23330 at 5708.563 kb on - strand, within CA265_RS23330 at 5708.567 kb on + strand, within CA265_RS23330 at 5708.629 kb on + strand at 5708.630 kb on - strand at 5708.662 kb on - strand at 5708.684 kb on - strand at 5708.784 kb on - strand at 5708.784 kb on - strand at 5708.803 kb on + strand at 5708.804 kb on - strand at 5708.839 kb on + strand at 5708.840 kb on - strand at 5708.840 kb on - strand at 5708.840 kb on - strand at 5708.925 kb on - strand at 5708.925 kb on - strand at 5708.929 kb on - strand at 5708.932 kb on - strand at 5708.977 kb on - strand at 5708.977 kb on - strand at 5709.031 kb on + strand at 5709.084 kb on - strand at 5709.087 kb on + strand at 5709.091 kb on - strand at 5709.102 kb on + strand at 5709.148 kb on - strand at 5709.152 kb on + strand at 5709.152 kb on + strand at 5709.153 kb on - strand at 5709.153 kb on - strand at 5709.204 kb on - strand at 5709.241 kb on - strand at 5709.267 kb on + strand at 5709.268 kb on - strand at 5709.280 kb on - strand at 5709.280 kb on - strand at 5709.280 kb on - strand at 5709.386 kb on + strand, within CA265_RS23335 at 5709.389 kb on - strand, within CA265_RS23335 at 5709.389 kb on - strand, within CA265_RS23335 at 5709.417 kb on - strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.470 kb on + strand, within CA265_RS23335 at 5709.471 kb on - strand, within CA265_RS23335 at 5709.474 kb on + strand, within CA265_RS23335 at 5709.475 kb on - strand, within CA265_RS23335 at 5709.510 kb on + strand, within CA265_RS23335 at 5709.511 kb on - strand, within CA265_RS23335 at 5709.659 kb on + strand, within CA265_RS23335 at 5709.659 kb on + strand, within CA265_RS23335 at 5709.714 kb on + strand, within CA265_RS23335 at 5709.743 kb on + strand, within CA265_RS23335 at 5709.744 kb on - strand, within CA265_RS23335 at 5709.799 kb on - strand, within CA265_RS23335 at 5709.826 kb on - strand, within CA265_RS23335 at 5709.854 kb on + strand, within CA265_RS23335 at 5709.929 kb on + strand, within CA265_RS23335 at 5709.974 kb on - strand, within CA265_RS23335 at 5710.147 kb on - strand, within CA265_RS23335 at 5710.150 kb on + strand, within CA265_RS23335 at 5710.151 kb on - strand, within CA265_RS23335 at 5710.293 kb on + strand, within CA265_RS23335 at 5710.294 kb on - strand, within CA265_RS23335 at 5710.298 kb on + strand, within CA265_RS23335 at 5710.302 kb on + strand, within CA265_RS23335 at 5710.303 kb on - strand, within CA265_RS23335 at 5710.303 kb on - strand, within CA265_RS23335 at 5710.421 kb on + strand, within CA265_RS23335 at 5710.423 kb on + strand, within CA265_RS23335 at 5710.423 kb on + strand, within CA265_RS23335 at 5710.424 kb on - strand, within CA265_RS23335 at 5710.424 kb on - strand, within CA265_RS23335 at 5710.465 kb on + strand, within CA265_RS23335 at 5710.466 kb on - strand, within CA265_RS23335 at 5710.466 kb on - strand, within CA265_RS23335 at 5710.521 kb on + strand, within CA265_RS23335 at 5710.563 kb on + strand, within CA265_RS23335 at 5710.563 kb on + strand, within CA265_RS23335 at 5710.564 kb on - strand, within CA265_RS23335 at 5710.630 kb on + strand, within CA265_RS23335 at 5710.749 kb on - strand, within CA265_RS23335 at 5710.750 kb on + strand, within CA265_RS23335 at 5710.753 kb on - strand, within CA265_RS23335 at 5710.823 kb on - strand, within CA265_RS23335 at 5710.856 kb on + strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.168 kb on - strand, within CA265_RS23335 at 5711.169 kb on + strand, within CA265_RS23335 at 5711.170 kb on - strand, within CA265_RS23335 at 5711.222 kb on - strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.267 kb on - strand, within CA265_RS23335 at 5711.267 kb on - strand, within CA265_RS23335 at 5711.286 kb on + strand, within CA265_RS23335 at 5711.289 kb on + strand, within CA265_RS23335 at 5711.299 kb on - strand, within CA265_RS23335 at 5711.299 kb on - strand, within CA265_RS23335 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.364 kb on + strand, within CA265_RS23335 at 5711.445 kb on + strand, within CA265_RS23335 at 5711.446 kb on - strand, within CA265_RS23335 at 5711.506 kb on + strand, within CA265_RS23335 at 5711.508 kb on + strand, within CA265_RS23335 at 5711.531 kb on - strand, within CA265_RS23335 at 5711.540 kb on + strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.634 kb on - strand, within CA265_RS23335 at 5711.644 kb on - strand, within CA265_RS23335 at 5711.709 kb on + strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.820 kb on - strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.878 kb on - strand, within CA265_RS23335 at 5711.899 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.946 kb on - strand at 5712.010 kb on - strand at 5712.010 kb on - strand at 5712.013 kb on - strand at 5712.098 kb on + strand at 5712.099 kb on - strand at 5712.136 kb on - strand at 5712.150 kb on - strand at 5712.156 kb on - strand at 5712.156 kb on - strand at 5712.160 kb on - strand at 5712.175 kb on - strand at 5712.197 kb on + strand at 5712.197 kb on + strand at 5712.203 kb on + strand at 5712.276 kb on - strand at 5712.277 kb on + strand at 5712.282 kb on - strand at 5712.282 kb on - strand at 5712.297 kb on - strand at 5712.409 kb on - strand at 5712.582 kb on + strand at 5712.582 kb on + strand at 5712.583 kb on - strand at 5712.612 kb on - strand, within CA265_RS23340 at 5712.612 kb on - strand, within CA265_RS23340 at 5712.629 kb on + strand, within CA265_RS23340 at 5712.646 kb on + strand, within CA265_RS23340 at 5712.676 kb on - strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.741 kb on + strand, within CA265_RS23340 at 5712.757 kb on + strand, within CA265_RS23340 at 5712.808 kb on + strand, within CA265_RS23340 at 5712.809 kb on - strand, within CA265_RS23340 at 5712.815 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.866 kb on + strand, within CA265_RS23340 at 5712.900 kb on + strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5713.045 kb on - strand, within CA265_RS23340 at 5713.111 kb on - strand, within CA265_RS23340 at 5713.115 kb on - strand, within CA265_RS23340 at 5713.127 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.213 kb on + strand, within CA265_RS23340 at 5713.222 kb on + strand, within CA265_RS23340 at 5713.262 kb on - strand, within CA265_RS23340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 5,708,092 - CA265_RS23330 0.75 +2.9 5,708,092 - CA265_RS23330 0.75 +1.7 5,708,124 + CA265_RS23330 0.76 -0.1 5,708,199 - CA265_RS23330 0.78 -0.0 5,708,212 + CA265_RS23330 0.79 -0.2 5,708,213 - CA265_RS23330 0.79 -1.4 5,708,218 - CA265_RS23330 0.79 -1.0 5,708,250 + CA265_RS23330 0.80 -1.5 5,708,299 + CA265_RS23330 0.81 -0.3 5,708,299 + CA265_RS23330 0.81 +1.9 5,708,331 + CA265_RS23330 0.82 -1.8 5,708,403 + CA265_RS23330 0.84 -0.6 5,708,403 + CA265_RS23330 0.84 -1.6 5,708,403 + CA265_RS23330 0.84 -0.3 5,708,404 - CA265_RS23330 0.84 +0.3 5,708,404 - CA265_RS23330 0.84 +1.0 5,708,436 - CA265_RS23330 0.85 -1.6 5,708,463 - CA265_RS23330 0.86 -1.2 5,708,476 - CA265_RS23330 0.87 +0.8 5,708,490 + CA265_RS23330 0.87 -0.1 5,708,491 - CA265_RS23330 0.87 +0.3 5,708,491 - CA265_RS23330 0.87 -1.0 5,708,517 - CA265_RS23330 0.88 +0.4 5,708,560 + CA265_RS23330 0.89 -0.4 5,708,562 + CA265_RS23330 0.89 +0.8 5,708,563 - CA265_RS23330 0.89 +0.1 5,708,567 + CA265_RS23330 0.89 +0.3 5,708,629 + -1.5 5,708,630 - +0.2 5,708,662 - -0.4 5,708,684 - -1.5 5,708,784 - +0.4 5,708,784 - -0.7 5,708,803 + +0.4 5,708,804 - +0.1 5,708,839 + -0.0 5,708,840 - +0.8 5,708,840 - -0.9 5,708,840 - +0.1 5,708,925 - +1.3 5,708,925 - -0.9 5,708,929 - -0.9 5,708,932 - -0.9 5,708,977 - +0.1 5,708,977 - -0.7 5,709,031 + -0.5 5,709,084 - +0.6 5,709,087 + +0.6 5,709,091 - +0.1 5,709,102 + -0.7 5,709,148 - -0.7 5,709,152 + +1.1 5,709,152 + +0.1 5,709,153 - -1.0 5,709,153 - -0.3 5,709,204 - -0.2 5,709,241 - -0.6 5,709,267 + -1.9 5,709,268 - -0.1 5,709,280 - +0.1 5,709,280 - -1.5 5,709,280 - -0.0 5,709,386 + CA265_RS23335 0.11 -0.1 5,709,389 - CA265_RS23335 0.11 -1.1 5,709,389 - CA265_RS23335 0.11 -0.4 5,709,417 - CA265_RS23335 0.12 +0.7 5,709,427 + CA265_RS23335 0.12 -1.3 5,709,427 + CA265_RS23335 0.12 +0.5 5,709,427 + CA265_RS23335 0.12 -1.5 5,709,470 + CA265_RS23335 0.14 -1.1 5,709,471 - CA265_RS23335 0.14 -0.6 5,709,474 + CA265_RS23335 0.14 +0.3 5,709,475 - CA265_RS23335 0.14 -1.7 5,709,510 + CA265_RS23335 0.15 -0.2 5,709,511 - CA265_RS23335 0.15 +0.4 5,709,659 + CA265_RS23335 0.20 +0.0 5,709,659 + CA265_RS23335 0.20 -0.6 5,709,714 + CA265_RS23335 0.21 +2.1 5,709,743 + CA265_RS23335 0.22 +1.1 5,709,744 - CA265_RS23335 0.22 -1.9 5,709,799 - CA265_RS23335 0.24 +0.0 5,709,826 - CA265_RS23335 0.25 -0.5 5,709,854 + CA265_RS23335 0.26 +0.8 5,709,929 + CA265_RS23335 0.28 -0.5 5,709,974 - CA265_RS23335 0.29 -2.4 5,710,147 - CA265_RS23335 0.35 +0.3 5,710,150 + CA265_RS23335 0.35 -1.7 5,710,151 - CA265_RS23335 0.35 +0.5 5,710,293 + CA265_RS23335 0.39 +0.8 5,710,294 - CA265_RS23335 0.39 -1.9 5,710,298 + CA265_RS23335 0.39 +0.1 5,710,302 + CA265_RS23335 0.39 +0.2 5,710,303 - CA265_RS23335 0.40 +0.3 5,710,303 - CA265_RS23335 0.40 +0.4 5,710,421 + CA265_RS23335 0.43 +0.9 5,710,423 + CA265_RS23335 0.43 +2.4 5,710,423 + CA265_RS23335 0.43 -0.2 5,710,424 - CA265_RS23335 0.43 -0.6 5,710,424 - CA265_RS23335 0.43 +1.0 5,710,465 + CA265_RS23335 0.44 +0.9 5,710,466 - CA265_RS23335 0.45 -0.8 5,710,466 - CA265_RS23335 0.45 -0.5 5,710,521 + CA265_RS23335 0.46 +0.1 5,710,563 + CA265_RS23335 0.48 +1.8 5,710,563 + CA265_RS23335 0.48 -0.1 5,710,564 - CA265_RS23335 0.48 +0.6 5,710,630 + CA265_RS23335 0.50 -0.1 5,710,749 - CA265_RS23335 0.53 -2.0 5,710,750 + CA265_RS23335 0.53 -0.4 5,710,753 - CA265_RS23335 0.53 +0.0 5,710,823 - CA265_RS23335 0.56 +1.1 5,710,856 + CA265_RS23335 0.57 +1.6 5,711,065 - CA265_RS23335 0.63 +0.7 5,711,065 - CA265_RS23335 0.63 -0.3 5,711,065 - CA265_RS23335 0.63 -0.4 5,711,065 - CA265_RS23335 0.63 -0.1 5,711,168 - CA265_RS23335 0.66 -0.2 5,711,169 + CA265_RS23335 0.66 +0.1 5,711,170 - CA265_RS23335 0.66 +0.6 5,711,222 - CA265_RS23335 0.68 +0.7 5,711,266 + CA265_RS23335 0.69 -1.6 5,711,266 + CA265_RS23335 0.69 +0.2 5,711,266 + CA265_RS23335 0.69 -1.3 5,711,266 + CA265_RS23335 0.69 -0.0 5,711,267 - CA265_RS23335 0.69 -0.1 5,711,267 - CA265_RS23335 0.69 -0.7 5,711,286 + CA265_RS23335 0.70 -0.1 5,711,289 + CA265_RS23335 0.70 +0.2 5,711,299 - CA265_RS23335 0.70 +1.6 5,711,299 - CA265_RS23335 0.70 +0.6 5,711,311 - CA265_RS23335 0.71 -0.0 5,711,311 - CA265_RS23335 0.71 -0.0 5,711,364 + CA265_RS23335 0.72 +0.2 5,711,445 + CA265_RS23335 0.75 +0.7 5,711,446 - CA265_RS23335 0.75 -0.4 5,711,506 + CA265_RS23335 0.77 +0.7 5,711,508 + CA265_RS23335 0.77 -0.8 5,711,531 - CA265_RS23335 0.77 +0.2 5,711,540 + CA265_RS23335 0.78 +1.4 5,711,574 - CA265_RS23335 0.79 +1.2 5,711,574 - CA265_RS23335 0.79 +0.6 5,711,634 - CA265_RS23335 0.81 +0.2 5,711,644 - CA265_RS23335 0.81 +0.0 5,711,709 + CA265_RS23335 0.83 -1.2 5,711,710 - CA265_RS23335 0.83 -0.8 5,711,710 - CA265_RS23335 0.83 +0.6 5,711,724 + CA265_RS23335 0.83 +0.0 5,711,724 + CA265_RS23335 0.83 -0.6 5,711,776 - CA265_RS23335 0.85 +1.3 5,711,776 - CA265_RS23335 0.85 -0.4 5,711,820 - CA265_RS23335 0.86 +0.4 5,711,877 + CA265_RS23335 0.88 +1.9 5,711,877 + CA265_RS23335 0.88 +0.5 5,711,877 + CA265_RS23335 0.88 -1.6 5,711,878 - CA265_RS23335 0.88 +1.7 5,711,899 - CA265_RS23335 0.89 -0.1 5,711,935 - CA265_RS23335 0.90 -0.3 5,711,935 - CA265_RS23335 0.90 +5.0 5,711,946 - -0.2 5,712,010 - +0.2 5,712,010 - -0.6 5,712,013 - -0.5 5,712,098 + +0.1 5,712,099 - -1.0 5,712,136 - -0.0 5,712,150 - +0.2 5,712,156 - -0.9 5,712,156 - -0.6 5,712,160 - +0.2 5,712,175 - -0.3 5,712,197 + +0.4 5,712,197 + +0.4 5,712,203 + +0.3 5,712,276 - -0.5 5,712,277 + -0.5 5,712,282 - -1.1 5,712,282 - +0.1 5,712,297 - +0.7 5,712,409 - +0.2 5,712,582 + +0.5 5,712,582 + -2.5 5,712,583 - -1.6 5,712,612 - CA265_RS23340 0.11 -0.5 5,712,612 - CA265_RS23340 0.11 -0.0 5,712,629 + CA265_RS23340 0.11 -1.6 5,712,646 + CA265_RS23340 0.12 -1.3 5,712,676 - CA265_RS23340 0.13 -0.9 5,712,696 + CA265_RS23340 0.14 -0.1 5,712,696 + CA265_RS23340 0.14 -0.5 5,712,715 - CA265_RS23340 0.14 +0.8 5,712,715 - CA265_RS23340 0.14 -1.3 5,712,715 - CA265_RS23340 0.14 -1.1 5,712,741 + CA265_RS23340 0.15 +0.5 5,712,757 + CA265_RS23340 0.16 -0.2 5,712,808 + CA265_RS23340 0.18 +0.1 5,712,809 - CA265_RS23340 0.18 +1.3 5,712,815 - CA265_RS23340 0.18 +0.2 5,712,836 - CA265_RS23340 0.19 -0.1 5,712,836 - CA265_RS23340 0.19 -1.3 5,712,836 - CA265_RS23340 0.19 +0.4 5,712,866 + CA265_RS23340 0.20 -1.6 5,712,900 + CA265_RS23340 0.21 +0.1 5,712,913 - CA265_RS23340 0.22 -1.3 5,712,913 - CA265_RS23340 0.22 -0.0 5,713,045 - CA265_RS23340 0.26 -1.1 5,713,111 - CA265_RS23340 0.29 -0.2 5,713,115 - CA265_RS23340 0.29 -0.1 5,713,127 + CA265_RS23340 0.29 +1.2 5,713,179 + CA265_RS23340 0.31 -1.1 5,713,179 + CA265_RS23340 0.31 +0.9 5,713,213 + CA265_RS23340 0.32 +0.1 5,713,222 + CA265_RS23340 0.33 +0.4 5,713,262 - CA265_RS23340 0.34 -1.0
Or see this region's nucleotide sequence