Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22635 and CA265_RS22640 are separated by 237 nucleotides CA265_RS22640 and CA265_RS22645 are separated by 146 nucleotides
CA265_RS22635: CA265_RS22635 - phosphoserine phosphatase (EC 3.1.3.3) <small>(from data)</small>, at 5,542,233 to 5,543,534
_RS22635
CA265_RS22640: CA265_RS22640 - chloride channel protein, at 5,543,772 to 5,545,061
_RS22640
CA265_RS22645: CA265_RS22645 - tryptophan 2,3-dioxygenase, at 5,545,208 to 5,546,173
_RS22645
Position (kb) 5543
5544
5545
5546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5543.079 kb on - strand, within CA265_RS22635 at 5543.128 kb on + strand, within CA265_RS22635 at 5543.508 kb on - strand at 5543.580 kb on - strand at 5543.681 kb on + strand at 5543.681 kb on + strand at 5543.742 kb on + strand at 5543.743 kb on - strand at 5543.863 kb on + strand at 5543.919 kb on + strand, within CA265_RS22640 at 5543.928 kb on - strand, within CA265_RS22640 at 5543.933 kb on + strand, within CA265_RS22640 at 5544.114 kb on + strand, within CA265_RS22640 at 5544.115 kb on - strand, within CA265_RS22640 at 5544.131 kb on + strand, within CA265_RS22640 at 5544.132 kb on - strand, within CA265_RS22640 at 5544.232 kb on - strand, within CA265_RS22640 at 5544.334 kb on - strand, within CA265_RS22640 at 5544.337 kb on - strand, within CA265_RS22640 at 5544.358 kb on - strand, within CA265_RS22640 at 5544.360 kb on + strand, within CA265_RS22640 at 5544.435 kb on - strand, within CA265_RS22640 at 5544.437 kb on - strand at 5544.624 kb on - strand, within CA265_RS22640 at 5544.690 kb on + strand, within CA265_RS22640 at 5544.702 kb on - strand, within CA265_RS22640 at 5544.910 kb on - strand, within CA265_RS22640 at 5544.973 kb on - strand at 5545.010 kb on + strand at 5545.158 kb on - strand at 5545.161 kb on + strand at 5545.162 kb on - strand at 5545.197 kb on - strand at 5545.228 kb on - strand at 5545.228 kb on - strand at 5545.239 kb on + strand at 5545.248 kb on + strand at 5545.248 kb on + strand at 5545.260 kb on - strand at 5545.306 kb on - strand, within CA265_RS22645 at 5545.308 kb on - strand, within CA265_RS22645 at 5545.326 kb on - strand, within CA265_RS22645 at 5545.334 kb on + strand, within CA265_RS22645 at 5545.335 kb on - strand, within CA265_RS22645 at 5545.409 kb on + strand, within CA265_RS22645 at 5545.410 kb on - strand, within CA265_RS22645 at 5545.436 kb on - strand, within CA265_RS22645 at 5545.539 kb on + strand, within CA265_RS22645 at 5545.609 kb on - strand, within CA265_RS22645 at 5545.672 kb on + strand, within CA265_RS22645 at 5545.707 kb on + strand, within CA265_RS22645 at 5545.707 kb on + strand, within CA265_RS22645 at 5545.722 kb on + strand, within CA265_RS22645 at 5545.722 kb on + strand, within CA265_RS22645 at 5545.723 kb on - strand, within CA265_RS22645 at 5545.723 kb on - strand, within CA265_RS22645 at 5545.742 kb on - strand, within CA265_RS22645 at 5545.877 kb on + strand, within CA265_RS22645 at 5545.877 kb on + strand, within CA265_RS22645 at 5545.878 kb on - strand, within CA265_RS22645 at 5545.946 kb on + strand, within CA265_RS22645 at 5545.951 kb on - strand, within CA265_RS22645 at 5545.990 kb on - strand, within CA265_RS22645 at 5546.017 kb on + strand, within CA265_RS22645 at 5546.017 kb on + strand, within CA265_RS22645
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 5,543,079 - CA265_RS22635 0.65 -1.5 5,543,128 + CA265_RS22635 0.69 -1.0 5,543,508 - -1.4 5,543,580 - -0.5 5,543,681 + -0.6 5,543,681 + -0.8 5,543,742 + +0.9 5,543,743 - -1.6 5,543,863 + +0.3 5,543,919 + CA265_RS22640 0.11 -1.1 5,543,928 - CA265_RS22640 0.12 -3.2 5,543,933 + CA265_RS22640 0.12 -1.2 5,544,114 + CA265_RS22640 0.27 -0.2 5,544,115 - CA265_RS22640 0.27 -1.5 5,544,131 + CA265_RS22640 0.28 +1.4 5,544,132 - CA265_RS22640 0.28 -1.3 5,544,232 - CA265_RS22640 0.36 -1.4 5,544,334 - CA265_RS22640 0.44 -0.7 5,544,337 - CA265_RS22640 0.44 -1.9 5,544,358 - CA265_RS22640 0.45 -1.8 5,544,360 + CA265_RS22640 0.46 -3.0 5,544,435 - CA265_RS22640 0.51 -1.7 5,544,437 - +0.9 5,544,624 - CA265_RS22640 0.66 -1.9 5,544,690 + CA265_RS22640 0.71 -1.6 5,544,702 - CA265_RS22640 0.72 -1.9 5,544,910 - CA265_RS22640 0.88 -1.5 5,544,973 - -2.6 5,545,010 + +0.2 5,545,158 - -2.3 5,545,161 + +0.6 5,545,162 - -1.5 5,545,197 - -0.9 5,545,228 - -2.9 5,545,228 - -0.9 5,545,239 + -1.0 5,545,248 + +2.3 5,545,248 + +1.8 5,545,260 - -2.5 5,545,306 - CA265_RS22645 0.10 -1.9 5,545,308 - CA265_RS22645 0.10 -1.4 5,545,326 - CA265_RS22645 0.12 +0.1 5,545,334 + CA265_RS22645 0.13 +1.4 5,545,335 - CA265_RS22645 0.13 -3.4 5,545,409 + CA265_RS22645 0.21 +1.4 5,545,410 - CA265_RS22645 0.21 -3.4 5,545,436 - CA265_RS22645 0.24 -2.2 5,545,539 + CA265_RS22645 0.34 +3.0 5,545,609 - CA265_RS22645 0.42 -1.3 5,545,672 + CA265_RS22645 0.48 +3.3 5,545,707 + CA265_RS22645 0.52 +2.4 5,545,707 + CA265_RS22645 0.52 +2.2 5,545,722 + CA265_RS22645 0.53 +2.8 5,545,722 + CA265_RS22645 0.53 +2.9 5,545,723 - CA265_RS22645 0.53 -1.9 5,545,723 - CA265_RS22645 0.53 -2.3 5,545,742 - CA265_RS22645 0.55 -0.8 5,545,877 + CA265_RS22645 0.69 +1.1 5,545,877 + CA265_RS22645 0.69 +3.1 5,545,878 - CA265_RS22645 0.69 -2.2 5,545,946 + CA265_RS22645 0.76 +3.7 5,545,951 - CA265_RS22645 0.77 -1.1 5,545,990 - CA265_RS22645 0.81 -1.4 5,546,017 + CA265_RS22645 0.84 +2.9 5,546,017 + CA265_RS22645 0.84 +1.8
Or see this region's nucleotide sequence