Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20705

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS20690 and CA265_RS20695 overlap by 4 nucleotidesCA265_RS20695 and CA265_RS20700 are separated by 11 nucleotidesCA265_RS20700 and CA265_RS20705 are separated by 33 nucleotidesCA265_RS20705 and CA265_RS20710 overlap by 1 nucleotidesCA265_RS20710 and CA265_RS20715 overlap by 29 nucleotides CA265_RS20690: CA265_RS20690 - hypothetical protein, at 5,118,035 to 5,118,415 _RS20690 CA265_RS20695: CA265_RS20695 - hypothetical protein, at 5,118,412 to 5,118,744 _RS20695 CA265_RS20700: CA265_RS20700 - plasmid transfer protein, at 5,118,756 to 5,119,058 _RS20700 CA265_RS20705: CA265_RS20705 - conjugal transfer protein, at 5,119,092 to 5,119,403 _RS20705 CA265_RS20710: CA265_RS20710 - DUF4133 domain-containing protein, at 5,119,403 to 5,119,708 _RS20710 CA265_RS20715: CA265_RS20715 - conjugal transfer protein TraG, at 5,119,680 to 5,122,130 _RS20715 Position (kb) 5119 5120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5118.279 kb on + strand, within CA265_RS20690at 5118.327 kb on + strand, within CA265_RS20690at 5118.429 kb on + strandat 5118.451 kb on + strand, within CA265_RS20695at 5118.452 kb on - strand, within CA265_RS20695at 5118.464 kb on - strand, within CA265_RS20695at 5118.489 kb on - strand, within CA265_RS20695at 5118.590 kb on + strand, within CA265_RS20695at 5118.724 kb on - strandat 5118.724 kb on - strandat 5118.739 kb on + strandat 5118.743 kb on - strandat 5118.755 kb on + strandat 5118.796 kb on + strand, within CA265_RS20700at 5118.797 kb on - strand, within CA265_RS20700at 5118.830 kb on + strand, within CA265_RS20700at 5118.830 kb on + strand, within CA265_RS20700at 5118.895 kb on + strand, within CA265_RS20700at 5118.896 kb on - strand, within CA265_RS20700at 5118.945 kb on - strand, within CA265_RS20700at 5118.945 kb on - strand, within CA265_RS20700at 5118.986 kb on - strand, within CA265_RS20700at 5119.087 kb on - strandat 5119.091 kb on + strandat 5119.270 kb on + strand, within CA265_RS20705at 5119.287 kb on + strand, within CA265_RS20705at 5119.288 kb on - strand, within CA265_RS20705at 5119.421 kb on + strandat 5119.421 kb on + strandat 5119.422 kb on - strandat 5119.446 kb on + strand, within CA265_RS20710at 5119.446 kb on + strand, within CA265_RS20710at 5119.446 kb on + strand, within CA265_RS20710at 5119.446 kb on + strand, within CA265_RS20710at 5119.447 kb on - strand, within CA265_RS20710at 5119.544 kb on + strand, within CA265_RS20710at 5119.544 kb on + strand, within CA265_RS20710at 5119.545 kb on - strand, within CA265_RS20710at 5119.545 kb on - strand, within CA265_RS20710at 5119.647 kb on + strand, within CA265_RS20710at 5119.647 kb on + strand, within CA265_RS20710at 5119.648 kb on - strand, within CA265_RS20710at 5119.648 kb on - strand, within CA265_RS20710at 5119.668 kb on + strand, within CA265_RS20710at 5119.675 kb on - strand, within CA265_RS20710at 5119.675 kb on - strand, within CA265_RS20710at 5119.675 kb on - strand, within CA265_RS20710at 5119.853 kb on + strandat 5119.853 kb on + strandat 5119.854 kb on - strandat 5119.909 kb on + strandat 5119.909 kb on + strandat 5119.909 kb on + strandat 5119.965 kb on + strand, within CA265_RS20715at 5119.965 kb on + strand, within CA265_RS20715at 5120.010 kb on + strand, within CA265_RS20715at 5120.010 kb on + strand, within CA265_RS20715at 5120.011 kb on - strand, within CA265_RS20715at 5120.137 kb on + strand, within CA265_RS20715at 5120.139 kb on + strand, within CA265_RS20715at 5120.140 kb on - strand, within CA265_RS20715at 5120.140 kb on - strand, within CA265_RS20715at 5120.268 kb on - strand, within CA265_RS20715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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5,118,279 + CA265_RS20690 0.64 -0.1
5,118,327 + CA265_RS20690 0.77 +0.4
5,118,429 + +1.6
5,118,451 + CA265_RS20695 0.12 -1.7
5,118,452 - CA265_RS20695 0.12 +2.2
5,118,464 - CA265_RS20695 0.16 +1.8
5,118,489 - CA265_RS20695 0.23 +2.3
5,118,590 + CA265_RS20695 0.53 +0.4
5,118,724 - +1.2
5,118,724 - -2.5
5,118,739 + -0.2
5,118,743 - -0.2
5,118,755 + +0.0
5,118,796 + CA265_RS20700 0.13 +1.7
5,118,797 - CA265_RS20700 0.14 -0.6
5,118,830 + CA265_RS20700 0.24 -2.0
5,118,830 + CA265_RS20700 0.24 -0.1
5,118,895 + CA265_RS20700 0.46 -1.4
5,118,896 - CA265_RS20700 0.46 +0.7
5,118,945 - CA265_RS20700 0.62 -0.1
5,118,945 - CA265_RS20700 0.62 -0.1
5,118,986 - CA265_RS20700 0.76 +0.5
5,119,087 - +0.4
5,119,091 + +0.4
5,119,270 + CA265_RS20705 0.57 -0.9
5,119,287 + CA265_RS20705 0.62 +0.2
5,119,288 - CA265_RS20705 0.63 -2.1
5,119,421 + -0.2
5,119,421 + +0.4
5,119,422 - -0.4
5,119,446 + CA265_RS20710 0.14 +0.5
5,119,446 + CA265_RS20710 0.14 +3.0
5,119,446 + CA265_RS20710 0.14 -0.6
5,119,446 + CA265_RS20710 0.14 -0.6
5,119,447 - CA265_RS20710 0.14 -1.0
5,119,544 + CA265_RS20710 0.46 -0.7
5,119,544 + CA265_RS20710 0.46 -2.3
5,119,545 - CA265_RS20710 0.46 -0.8
5,119,545 - CA265_RS20710 0.46 -1.0
5,119,647 + CA265_RS20710 0.80 -0.0
5,119,647 + CA265_RS20710 0.80 -0.6
5,119,648 - CA265_RS20710 0.80 +0.0
5,119,648 - CA265_RS20710 0.80 -0.4
5,119,668 + CA265_RS20710 0.87 -0.5
5,119,675 - CA265_RS20710 0.89 +0.2
5,119,675 - CA265_RS20710 0.89 +0.2
5,119,675 - CA265_RS20710 0.89 -1.0
5,119,853 + +0.3
5,119,853 + +0.7
5,119,854 - +1.5
5,119,909 + +1.4
5,119,909 + +1.1
5,119,909 + -0.6
5,119,965 + CA265_RS20715 0.12 -0.2
5,119,965 + CA265_RS20715 0.12 +0.6
5,120,010 + CA265_RS20715 0.13 +0.3
5,120,010 + CA265_RS20715 0.13 -0.2
5,120,011 - CA265_RS20715 0.14 -2.7
5,120,137 + CA265_RS20715 0.19 +0.4
5,120,139 + CA265_RS20715 0.19 -0.1
5,120,140 - CA265_RS20715 0.19 -0.4
5,120,140 - CA265_RS20715 0.19 -0.9
5,120,268 - CA265_RS20715 0.24 +0.1

Or see this region's nucleotide sequence