Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18900 and CA265_RS18905 are separated by 390 nucleotides CA265_RS18905 and CA265_RS18910 are separated by 3 nucleotides CA265_RS18910 and CA265_RS18915 are separated by 18 nucleotides CA265_RS18915 and CA265_RS18920 are separated by 129 nucleotides
CA265_RS18900: CA265_RS18900 - DNA-binding protein, at 4,698,661 to 4,699,185
_RS18900
CA265_RS18905: CA265_RS18905 - 50S ribosomal protein L13, at 4,699,576 to 4,700,019
_RS18905
CA265_RS18910: CA265_RS18910 - 30S ribosomal protein S9, at 4,700,023 to 4,700,409
_RS18910
CA265_RS18915: CA265_RS18915 - 30S ribosomal protein S2, at 4,700,428 to 4,701,261
_RS18915
CA265_RS18920: CA265_RS18920 - translation elongation factor Ts, at 4,701,391 to 4,702,236
_RS18920
Position (kb)
4700
4701 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4699.032 kb on + strand, within CA265_RS18900 at 4699.114 kb on + strand, within CA265_RS18900 at 4699.115 kb on - strand, within CA265_RS18900 at 4699.166 kb on - strand at 4699.166 kb on - strand at 4699.166 kb on - strand at 4699.168 kb on - strand at 4699.168 kb on - strand at 4699.207 kb on - strand at 4699.207 kb on - strand at 4699.223 kb on - strand at 4699.223 kb on - strand at 4699.244 kb on - strand at 4699.341 kb on - strand at 4699.355 kb on - strand at 4699.355 kb on - strand at 4701.320 kb on + strand at 4701.348 kb on + strand at 4701.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,699,032 + CA265_RS18900 0.71 -0.3 4,699,114 + CA265_RS18900 0.86 +0.9 4,699,115 - CA265_RS18900 0.86 +0.0 4,699,166 - -0.0 4,699,166 - +0.0 4,699,166 - -0.6 4,699,168 - +2.7 4,699,168 - +0.3 4,699,207 - -0.7 4,699,207 - +0.4 4,699,223 - +0.4 4,699,223 - +0.4 4,699,244 - +1.3 4,699,341 - -0.2 4,699,355 - +0.8 4,699,355 - -0.1 4,701,320 + +1.1 4,701,348 + +0.8 4,701,357 + -1.9
Or see this region's nucleotide sequence