Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16805 and CA265_RS16810 are separated by 69 nucleotides CA265_RS16810 and CA265_RS16815 are separated by 1 nucleotides CA265_RS16815 and CA265_RS16820 are separated by 71 nucleotides CA265_RS16820 and CA265_RS16825 are separated by 8 nucleotides
CA265_RS16805: CA265_RS16805 - 30S ribosomal protein S13, at 4,215,937 to 4,216,314
_RS16805
CA265_RS16810: CA265_RS16810 - 50S ribosomal protein L36, at 4,216,384 to 4,216,500
_RS16810
CA265_RS16815: CA265_RS16815 - translation initiation factor IF-1, at 4,216,502 to 4,216,720
_RS16815
CA265_RS16820: CA265_RS16820 - type I methionyl aminopeptidase, at 4,216,792 to 4,217,577
_RS16820
CA265_RS16825: CA265_RS16825 - preprotein translocase subunit SecY, at 4,217,586 to 4,218,926
_RS16825
Position (kb)
4216
4217
4218 Strain fitness (log2 ratio)
-2
-1
0
1 at 4216.868 kb on - strand at 4216.868 kb on - strand at 4217.025 kb on - strand, within CA265_RS16820 at 4217.115 kb on - strand, within CA265_RS16820 at 4217.173 kb on - strand, within CA265_RS16820 at 4217.282 kb on - strand, within CA265_RS16820 at 4217.429 kb on - strand, within CA265_RS16820 at 4217.444 kb on - strand, within CA265_RS16820 at 4217.537 kb on - strand at 4217.588 kb on - strand at 4217.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,216,868 - -1.8 4,216,868 - -0.2 4,217,025 - CA265_RS16820 0.30 -2.1 4,217,115 - CA265_RS16820 0.41 -1.2 4,217,173 - CA265_RS16820 0.48 -1.9 4,217,282 - CA265_RS16820 0.62 -1.6 4,217,429 - CA265_RS16820 0.81 -1.2 4,217,444 - CA265_RS16820 0.83 +0.0 4,217,537 - +0.9 4,217,588 - -1.1 4,217,604 - -2.2
Or see this region's nucleotide sequence