Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16820

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS16805 and CA265_RS16810 are separated by 69 nucleotidesCA265_RS16810 and CA265_RS16815 are separated by 1 nucleotidesCA265_RS16815 and CA265_RS16820 are separated by 71 nucleotidesCA265_RS16820 and CA265_RS16825 are separated by 8 nucleotides CA265_RS16805: CA265_RS16805 - 30S ribosomal protein S13, at 4,215,937 to 4,216,314 _RS16805 CA265_RS16810: CA265_RS16810 - 50S ribosomal protein L36, at 4,216,384 to 4,216,500 _RS16810 CA265_RS16815: CA265_RS16815 - translation initiation factor IF-1, at 4,216,502 to 4,216,720 _RS16815 CA265_RS16820: CA265_RS16820 - type I methionyl aminopeptidase, at 4,216,792 to 4,217,577 _RS16820 CA265_RS16825: CA265_RS16825 - preprotein translocase subunit SecY, at 4,217,586 to 4,218,926 _RS16825 Position (kb) 4216 4217 4218Strain fitness (log2 ratio) -2 -1 0 1at 4216.868 kb on - strandat 4216.868 kb on - strandat 4217.025 kb on - strand, within CA265_RS16820at 4217.115 kb on - strand, within CA265_RS16820at 4217.173 kb on - strand, within CA265_RS16820at 4217.282 kb on - strand, within CA265_RS16820at 4217.429 kb on - strand, within CA265_RS16820at 4217.444 kb on - strand, within CA265_RS16820at 4217.537 kb on - strandat 4217.588 kb on - strandat 4217.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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4,216,868 - -1.8
4,216,868 - -0.2
4,217,025 - CA265_RS16820 0.30 -2.1
4,217,115 - CA265_RS16820 0.41 -1.2
4,217,173 - CA265_RS16820 0.48 -1.9
4,217,282 - CA265_RS16820 0.62 -1.6
4,217,429 - CA265_RS16820 0.81 -1.2
4,217,444 - CA265_RS16820 0.83 +0.0
4,217,537 - +0.9
4,217,588 - -1.1
4,217,604 - -2.2

Or see this region's nucleotide sequence