Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16615 and CA265_RS16620 are separated by 65 nucleotides CA265_RS16620 and CA265_RS16625 are separated by 2 nucleotides CA265_RS16625 and CA265_RS16630 are separated by 159 nucleotides
CA265_RS16615: CA265_RS16615 - hypothetical protein, at 4,176,148 to 4,176,408
_RS16615
CA265_RS16620: CA265_RS16620 - carbonate dehydratase, at 4,176,474 to 4,177,130
_RS16620
CA265_RS16625: CA265_RS16625 - hypothetical protein, at 4,177,133 to 4,178,740
_RS16625
CA265_RS16630: CA265_RS16630 - hypothetical protein, at 4,178,900 to 4,179,244
_RS16630
Position (kb) 4177
4178
4179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4176.165 kb on + strand at 4176.166 kb on - strand at 4176.220 kb on - strand, within CA265_RS16615 at 4176.259 kb on - strand, within CA265_RS16615 at 4176.480 kb on + strand at 4176.515 kb on + strand at 4176.558 kb on - strand, within CA265_RS16620 at 4176.609 kb on + strand, within CA265_RS16620 at 4176.620 kb on + strand, within CA265_RS16620 at 4176.628 kb on - strand, within CA265_RS16620 at 4176.719 kb on + strand, within CA265_RS16620 at 4176.727 kb on - strand, within CA265_RS16620 at 4176.758 kb on + strand, within CA265_RS16620 at 4176.840 kb on + strand, within CA265_RS16620 at 4176.848 kb on + strand, within CA265_RS16620 at 4176.849 kb on - strand, within CA265_RS16620 at 4176.864 kb on + strand, within CA265_RS16620 at 4176.914 kb on + strand, within CA265_RS16620 at 4176.915 kb on - strand, within CA265_RS16620 at 4176.941 kb on + strand, within CA265_RS16620 at 4176.948 kb on + strand, within CA265_RS16620 at 4177.052 kb on + strand, within CA265_RS16620 at 4177.070 kb on + strand at 4177.080 kb on + strand at 4177.093 kb on + strand at 4177.093 kb on + strand at 4177.094 kb on - strand at 4177.094 kb on - strand at 4177.114 kb on - strand at 4177.134 kb on + strand at 4177.145 kb on + strand at 4177.149 kb on - strand at 4177.166 kb on - strand at 4177.169 kb on + strand at 4177.185 kb on + strand at 4177.212 kb on - strand at 4177.237 kb on + strand at 4177.237 kb on + strand at 4177.252 kb on - strand at 4177.277 kb on + strand at 4177.277 kb on + strand at 4177.281 kb on + strand at 4177.282 kb on - strand at 4177.346 kb on + strand, within CA265_RS16625 at 4177.346 kb on + strand, within CA265_RS16625 at 4177.347 kb on - strand, within CA265_RS16625 at 4177.357 kb on + strand, within CA265_RS16625 at 4177.412 kb on + strand, within CA265_RS16625 at 4177.447 kb on + strand, within CA265_RS16625 at 4177.453 kb on + strand, within CA265_RS16625 at 4177.460 kb on + strand, within CA265_RS16625 at 4177.461 kb on - strand, within CA265_RS16625 at 4177.483 kb on + strand, within CA265_RS16625 at 4177.484 kb on - strand, within CA265_RS16625 at 4177.529 kb on + strand, within CA265_RS16625 at 4177.572 kb on + strand, within CA265_RS16625 at 4177.572 kb on + strand, within CA265_RS16625 at 4177.573 kb on - strand, within CA265_RS16625 at 4177.606 kb on + strand, within CA265_RS16625 at 4177.607 kb on - strand, within CA265_RS16625 at 4177.607 kb on - strand, within CA265_RS16625 at 4177.658 kb on - strand, within CA265_RS16625 at 4177.685 kb on + strand, within CA265_RS16625 at 4177.688 kb on + strand, within CA265_RS16625 at 4177.689 kb on - strand, within CA265_RS16625 at 4177.689 kb on - strand, within CA265_RS16625 at 4177.689 kb on - strand, within CA265_RS16625 at 4177.743 kb on - strand, within CA265_RS16625 at 4177.808 kb on - strand, within CA265_RS16625 at 4177.810 kb on + strand, within CA265_RS16625 at 4177.811 kb on - strand, within CA265_RS16625 at 4177.869 kb on - strand, within CA265_RS16625 at 4177.938 kb on - strand, within CA265_RS16625 at 4177.939 kb on + strand, within CA265_RS16625 at 4177.939 kb on + strand, within CA265_RS16625 at 4177.939 kb on + strand, within CA265_RS16625 at 4177.939 kb on + strand, within CA265_RS16625 at 4177.940 kb on - strand, within CA265_RS16625 at 4177.940 kb on - strand, within CA265_RS16625 at 4177.941 kb on + strand, within CA265_RS16625 at 4177.942 kb on - strand, within CA265_RS16625 at 4177.943 kb on + strand, within CA265_RS16625 at 4177.951 kb on + strand, within CA265_RS16625 at 4178.073 kb on - strand, within CA265_RS16625 at 4178.090 kb on + strand, within CA265_RS16625 at 4178.090 kb on + strand, within CA265_RS16625 at 4178.091 kb on - strand, within CA265_RS16625 at 4178.106 kb on - strand, within CA265_RS16625 at 4178.117 kb on + strand, within CA265_RS16625 at 4178.158 kb on + strand, within CA265_RS16625 at 4178.159 kb on - strand, within CA265_RS16625 at 4178.159 kb on - strand, within CA265_RS16625 at 4178.162 kb on + strand, within CA265_RS16625 at 4178.169 kb on - strand, within CA265_RS16625 at 4178.207 kb on + strand, within CA265_RS16625 at 4178.291 kb on + strand, within CA265_RS16625 at 4178.402 kb on + strand, within CA265_RS16625 at 4178.481 kb on - strand, within CA265_RS16625 at 4178.483 kb on + strand, within CA265_RS16625 at 4178.566 kb on + strand, within CA265_RS16625 at 4178.566 kb on + strand, within CA265_RS16625 at 4178.567 kb on - strand, within CA265_RS16625 at 4178.567 kb on - strand, within CA265_RS16625 at 4178.576 kb on + strand, within CA265_RS16625 at 4178.614 kb on + strand at 4178.618 kb on + strand at 4178.618 kb on + strand at 4178.653 kb on + strand at 4178.695 kb on - strand at 4178.747 kb on - strand at 4178.752 kb on + strand at 4178.753 kb on - strand at 4178.760 kb on - strand at 4178.773 kb on + strand at 4178.819 kb on + strand at 4178.819 kb on + strand at 4178.820 kb on - strand at 4178.878 kb on - strand at 4178.898 kb on + strand at 4178.901 kb on + strand at 4178.905 kb on + strand at 4178.940 kb on + strand, within CA265_RS16630 at 4178.948 kb on + strand, within CA265_RS16630 at 4178.953 kb on - strand, within CA265_RS16630 at 4179.080 kb on - strand, within CA265_RS16630 at 4179.152 kb on - strand, within CA265_RS16630 at 4179.174 kb on - strand, within CA265_RS16630 at 4179.175 kb on + strand, within CA265_RS16630 at 4179.176 kb on - strand, within CA265_RS16630 at 4179.229 kb on - strand at 4179.229 kb on - strand at 4179.255 kb on - strand at 4179.265 kb on + strand at 4179.272 kb on + strand at 4179.272 kb on + strand at 4179.273 kb on - strand at 4179.335 kb on + strand at 4179.336 kb on - strand at 4179.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,176,165 + -1.3 4,176,166 - -0.2 4,176,220 - CA265_RS16615 0.28 +0.9 4,176,259 - CA265_RS16615 0.43 +1.2 4,176,480 + +0.1 4,176,515 + +0.5 4,176,558 - CA265_RS16620 0.13 +0.0 4,176,609 + CA265_RS16620 0.21 -0.1 4,176,620 + CA265_RS16620 0.22 -1.2 4,176,628 - CA265_RS16620 0.23 +0.0 4,176,719 + CA265_RS16620 0.37 +0.2 4,176,727 - CA265_RS16620 0.39 +1.0 4,176,758 + CA265_RS16620 0.43 -0.5 4,176,840 + CA265_RS16620 0.56 +1.0 4,176,848 + CA265_RS16620 0.57 +0.2 4,176,849 - CA265_RS16620 0.57 -1.0 4,176,864 + CA265_RS16620 0.59 +0.7 4,176,914 + CA265_RS16620 0.67 +0.3 4,176,915 - CA265_RS16620 0.67 -2.1 4,176,941 + CA265_RS16620 0.71 +0.2 4,176,948 + CA265_RS16620 0.72 +0.3 4,177,052 + CA265_RS16620 0.88 -0.1 4,177,070 + +0.4 4,177,080 + +0.4 4,177,093 + +0.6 4,177,093 + +1.2 4,177,094 - +0.5 4,177,094 - -0.5 4,177,114 - -0.3 4,177,134 + +0.1 4,177,145 + -0.5 4,177,149 - -1.3 4,177,166 - +0.0 4,177,169 + +1.0 4,177,185 + +0.4 4,177,212 - -3.3 4,177,237 + +0.1 4,177,237 + +0.4 4,177,252 - -0.4 4,177,277 + -0.6 4,177,277 + +1.6 4,177,281 + -1.0 4,177,282 - -1.1 4,177,346 + CA265_RS16625 0.13 +0.6 4,177,346 + CA265_RS16625 0.13 -0.6 4,177,347 - CA265_RS16625 0.13 -2.3 4,177,357 + CA265_RS16625 0.14 -0.2 4,177,412 + CA265_RS16625 0.17 -0.7 4,177,447 + CA265_RS16625 0.20 +1.0 4,177,453 + CA265_RS16625 0.20 -0.8 4,177,460 + CA265_RS16625 0.20 +0.3 4,177,461 - CA265_RS16625 0.20 -1.1 4,177,483 + CA265_RS16625 0.22 -1.2 4,177,484 - CA265_RS16625 0.22 -1.2 4,177,529 + CA265_RS16625 0.25 -0.1 4,177,572 + CA265_RS16625 0.27 -0.8 4,177,572 + CA265_RS16625 0.27 +0.4 4,177,573 - CA265_RS16625 0.27 -1.2 4,177,606 + CA265_RS16625 0.29 +0.1 4,177,607 - CA265_RS16625 0.29 -0.6 4,177,607 - CA265_RS16625 0.29 +0.0 4,177,658 - CA265_RS16625 0.33 -0.1 4,177,685 + CA265_RS16625 0.34 +0.2 4,177,688 + CA265_RS16625 0.35 +0.1 4,177,689 - CA265_RS16625 0.35 -0.5 4,177,689 - CA265_RS16625 0.35 -1.6 4,177,689 - CA265_RS16625 0.35 +1.2 4,177,743 - CA265_RS16625 0.38 -0.7 4,177,808 - CA265_RS16625 0.42 -0.6 4,177,810 + CA265_RS16625 0.42 -0.2 4,177,811 - CA265_RS16625 0.42 -1.0 4,177,869 - CA265_RS16625 0.46 -2.2 4,177,938 - CA265_RS16625 0.50 -3.2 4,177,939 + CA265_RS16625 0.50 +1.0 4,177,939 + CA265_RS16625 0.50 -0.1 4,177,939 + CA265_RS16625 0.50 +0.2 4,177,939 + CA265_RS16625 0.50 +0.2 4,177,940 - CA265_RS16625 0.50 -0.2 4,177,940 - CA265_RS16625 0.50 -1.8 4,177,941 + CA265_RS16625 0.50 +1.1 4,177,942 - CA265_RS16625 0.50 -0.4 4,177,943 + CA265_RS16625 0.50 -1.5 4,177,951 + CA265_RS16625 0.51 -0.1 4,178,073 - CA265_RS16625 0.58 -1.1 4,178,090 + CA265_RS16625 0.60 +1.4 4,178,090 + CA265_RS16625 0.60 -0.2 4,178,091 - CA265_RS16625 0.60 -2.4 4,178,106 - CA265_RS16625 0.61 -1.2 4,178,117 + CA265_RS16625 0.61 +0.3 4,178,158 + CA265_RS16625 0.64 -0.2 4,178,159 - CA265_RS16625 0.64 -0.6 4,178,159 - CA265_RS16625 0.64 -1.7 4,178,162 + CA265_RS16625 0.64 -1.3 4,178,169 - CA265_RS16625 0.64 +2.7 4,178,207 + CA265_RS16625 0.67 -0.2 4,178,291 + CA265_RS16625 0.72 -0.6 4,178,402 + CA265_RS16625 0.79 +0.1 4,178,481 - CA265_RS16625 0.84 -0.5 4,178,483 + CA265_RS16625 0.84 +0.5 4,178,566 + CA265_RS16625 0.89 -0.7 4,178,566 + CA265_RS16625 0.89 +0.2 4,178,567 - CA265_RS16625 0.89 -0.4 4,178,567 - CA265_RS16625 0.89 -0.6 4,178,576 + CA265_RS16625 0.90 -0.8 4,178,614 + -0.2 4,178,618 + +0.6 4,178,618 + -0.4 4,178,653 + -0.8 4,178,695 - -0.3 4,178,747 - +0.5 4,178,752 + +1.0 4,178,753 - -1.2 4,178,760 - -2.3 4,178,773 + +1.0 4,178,819 + +0.1 4,178,819 + -0.3 4,178,820 - -1.4 4,178,878 - -1.2 4,178,898 + -2.5 4,178,901 + +0.4 4,178,905 + -0.1 4,178,940 + CA265_RS16630 0.12 +1.0 4,178,948 + CA265_RS16630 0.14 -1.0 4,178,953 - CA265_RS16630 0.15 -0.3 4,179,080 - CA265_RS16630 0.52 +0.3 4,179,152 - CA265_RS16630 0.73 +0.1 4,179,174 - CA265_RS16630 0.79 +0.4 4,179,175 + CA265_RS16630 0.80 -0.1 4,179,176 - CA265_RS16630 0.80 +0.6 4,179,229 - -0.2 4,179,229 - -0.7 4,179,255 - +0.3 4,179,265 + +0.1 4,179,272 + -0.5 4,179,272 + -0.7 4,179,273 - -0.6 4,179,335 + +1.5 4,179,336 - +1.1 4,179,337 + -0.1
Or see this region's nucleotide sequence