Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS14890 and CA265_RS14895 are separated by 548 nucleotides CA265_RS14895 and CA265_RS14900 are separated by 515 nucleotides
CA265_RS14890: CA265_RS14890 - Clp protease ClpC, at 3,752,438 to 3,754,990
_RS14890
CA265_RS14895: CA265_RS14895 - hypothetical protein, at 3,755,539 to 3,756,036
_RS14895
CA265_RS14900: CA265_RS14900 - hypothetical protein, at 3,756,552 to 3,759,476
_RS14900
Position (kb)
3755
3756
3757 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3754.994 kb on - strand at 3755.010 kb on - strand at 3755.176 kb on + strand at 3755.190 kb on + strand at 3755.192 kb on + strand at 3755.258 kb on - strand at 3755.300 kb on + strand at 3755.404 kb on + strand at 3755.404 kb on + strand at 3755.405 kb on - strand at 3755.418 kb on + strand at 3755.432 kb on + strand at 3755.481 kb on + strand at 3755.487 kb on - strand at 3755.546 kb on + strand at 3755.712 kb on + strand, within CA265_RS14895 at 3755.745 kb on + strand, within CA265_RS14895 at 3755.789 kb on - strand, within CA265_RS14895 at 3755.850 kb on + strand, within CA265_RS14895 at 3755.850 kb on + strand, within CA265_RS14895 at 3755.856 kb on + strand, within CA265_RS14895 at 3755.885 kb on + strand, within CA265_RS14895 at 3755.885 kb on + strand, within CA265_RS14895 at 3755.886 kb on - strand, within CA265_RS14895 at 3755.887 kb on + strand, within CA265_RS14895 at 3755.887 kb on + strand, within CA265_RS14895 at 3755.890 kb on + strand, within CA265_RS14895 at 3755.964 kb on + strand, within CA265_RS14895 at 3756.014 kb on - strand at 3756.081 kb on + strand at 3756.081 kb on + strand at 3756.084 kb on + strand at 3756.092 kb on + strand at 3756.092 kb on + strand at 3756.206 kb on + strand at 3756.207 kb on - strand at 3756.291 kb on - strand at 3756.299 kb on + strand at 3756.339 kb on - strand at 3756.342 kb on + strand at 3756.417 kb on - strand at 3756.425 kb on - strand at 3756.425 kb on - strand at 3756.433 kb on - strand at 3756.435 kb on + strand at 3756.454 kb on - strand at 3756.458 kb on + strand at 3756.528 kb on + strand at 3756.529 kb on - strand at 3756.539 kb on + strand at 3756.590 kb on + strand at 3756.723 kb on + strand at 3756.723 kb on + strand at 3756.723 kb on + strand at 3756.726 kb on - strand at 3756.807 kb on - strand at 3756.815 kb on - strand at 3756.826 kb on + strand at 3756.870 kb on + strand, within CA265_RS14900 at 3756.871 kb on - strand, within CA265_RS14900 at 3756.940 kb on + strand, within CA265_RS14900
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,754,994 - +1.1 3,755,010 - -0.1 3,755,176 + -2.1 3,755,190 + +0.9 3,755,192 + +1.3 3,755,258 - -2.6 3,755,300 + -0.4 3,755,404 + -1.9 3,755,404 + -1.9 3,755,405 - -1.6 3,755,418 + +0.0 3,755,432 + -0.6 3,755,481 + -1.2 3,755,487 - -2.6 3,755,546 + +0.8 3,755,712 + CA265_RS14895 0.35 -1.6 3,755,745 + CA265_RS14895 0.41 -2.7 3,755,789 - CA265_RS14895 0.50 -2.2 3,755,850 + CA265_RS14895 0.62 -0.8 3,755,850 + CA265_RS14895 0.62 -2.4 3,755,856 + CA265_RS14895 0.64 -3.1 3,755,885 + CA265_RS14895 0.69 -2.6 3,755,885 + CA265_RS14895 0.69 +0.1 3,755,886 - CA265_RS14895 0.70 -0.0 3,755,887 + CA265_RS14895 0.70 +1.3 3,755,887 + CA265_RS14895 0.70 -3.7 3,755,890 + CA265_RS14895 0.70 -2.3 3,755,964 + CA265_RS14895 0.85 -1.0 3,756,014 - -1.8 3,756,081 + +0.3 3,756,081 + +0.4 3,756,084 + -0.4 3,756,092 + -1.0 3,756,092 + +1.6 3,756,206 + +1.7 3,756,207 - -0.9 3,756,291 - -1.3 3,756,299 + -0.5 3,756,339 - -1.6 3,756,342 + +0.2 3,756,417 - -0.7 3,756,425 - -0.4 3,756,425 - -0.8 3,756,433 - -1.7 3,756,435 + +1.7 3,756,454 - -0.5 3,756,458 + -0.3 3,756,528 + -0.4 3,756,529 - -0.6 3,756,539 + +0.5 3,756,590 + -1.4 3,756,723 + +0.1 3,756,723 + +0.8 3,756,723 + +1.1 3,756,726 - -1.3 3,756,807 - +1.0 3,756,815 - +0.5 3,756,826 + -0.1 3,756,870 + CA265_RS14900 0.11 -2.0 3,756,871 - CA265_RS14900 0.11 -0.6 3,756,940 + CA265_RS14900 0.13 -1.5
Or see this region's nucleotide sequence