Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS07710 and CA265_RS07715 are separated by 31 nucleotides CA265_RS07715 and CA265_RS07720 are separated by 96 nucleotides CA265_RS07720 and CA265_RS07725 are separated by 46 nucleotides
CA265_RS07710: CA265_RS07710 - Holliday junction branch migration DNA helicase RuvB, at 1,929,959 to 1,930,981
_RS07710
CA265_RS07715: CA265_RS07715 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,931,013 to 1,931,906
_RS07715
CA265_RS07720: CA265_RS07720 - pyridoxamine 5'-phosphate oxidase, at 1,932,003 to 1,932,653
_RS07720
CA265_RS07725: CA265_RS07725 - hypothetical protein, at 1,932,700 to 1,933,263
_RS07725
Position (kb) 1931
1932 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1930.051 kb on + strand at 1930.219 kb on + strand, within CA265_RS07710 at 1930.258 kb on + strand, within CA265_RS07710 at 1930.412 kb on - strand, within CA265_RS07710 at 1930.431 kb on + strand, within CA265_RS07710 at 1930.451 kb on - strand, within CA265_RS07710 at 1930.602 kb on + strand, within CA265_RS07710 at 1930.705 kb on + strand, within CA265_RS07710 at 1930.727 kb on + strand, within CA265_RS07710 at 1931.042 kb on + strand at 1931.065 kb on + strand at 1931.066 kb on - strand at 1931.091 kb on - strand at 1931.144 kb on - strand, within CA265_RS07715 at 1931.153 kb on + strand, within CA265_RS07715 at 1931.169 kb on + strand, within CA265_RS07715 at 1931.178 kb on + strand, within CA265_RS07715 at 1931.179 kb on - strand, within CA265_RS07715 at 1931.223 kb on + strand, within CA265_RS07715 at 1931.296 kb on + strand, within CA265_RS07715 at 1931.299 kb on - strand, within CA265_RS07715 at 1931.400 kb on + strand, within CA265_RS07715 at 1931.408 kb on + strand, within CA265_RS07715 at 1931.458 kb on - strand, within CA265_RS07715 at 1931.458 kb on - strand, within CA265_RS07715 at 1931.552 kb on - strand, within CA265_RS07715 at 1931.591 kb on - strand, within CA265_RS07715 at 1931.591 kb on - strand, within CA265_RS07715 at 1931.591 kb on - strand, within CA265_RS07715 at 1931.599 kb on - strand, within CA265_RS07715 at 1931.692 kb on + strand, within CA265_RS07715 at 1931.700 kb on - strand, within CA265_RS07715 at 1931.706 kb on - strand, within CA265_RS07715 at 1931.736 kb on + strand, within CA265_RS07715 at 1931.736 kb on + strand, within CA265_RS07715 at 1931.838 kb on - strand at 1931.888 kb on + strand at 1931.941 kb on - strand at 1931.948 kb on + strand at 1931.949 kb on - strand at 1931.957 kb on + strand at 1932.675 kb on + strand at 1932.683 kb on - strand at 1932.694 kb on - strand at 1932.786 kb on - strand, within CA265_RS07725 at 1932.824 kb on - strand, within CA265_RS07725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,930,051 + -1.1 1,930,219 + CA265_RS07710 0.25 -0.9 1,930,258 + CA265_RS07710 0.29 -2.9 1,930,412 - CA265_RS07710 0.44 -1.4 1,930,431 + CA265_RS07710 0.46 -1.3 1,930,451 - CA265_RS07710 0.48 -1.8 1,930,602 + CA265_RS07710 0.63 -1.0 1,930,705 + CA265_RS07710 0.73 -2.8 1,930,727 + CA265_RS07710 0.75 -0.2 1,931,042 + +0.8 1,931,065 + +1.6 1,931,066 - -0.2 1,931,091 - +0.6 1,931,144 - CA265_RS07715 0.15 -0.8 1,931,153 + CA265_RS07715 0.16 -0.3 1,931,169 + CA265_RS07715 0.17 -0.4 1,931,178 + CA265_RS07715 0.18 +0.3 1,931,179 - CA265_RS07715 0.19 -1.6 1,931,223 + CA265_RS07715 0.23 -1.1 1,931,296 + CA265_RS07715 0.32 -2.0 1,931,299 - CA265_RS07715 0.32 +0.8 1,931,400 + CA265_RS07715 0.43 -1.5 1,931,408 + CA265_RS07715 0.44 -0.4 1,931,458 - CA265_RS07715 0.50 +0.3 1,931,458 - CA265_RS07715 0.50 -0.2 1,931,552 - CA265_RS07715 0.60 +0.1 1,931,591 - CA265_RS07715 0.65 -0.4 1,931,591 - CA265_RS07715 0.65 +1.0 1,931,591 - CA265_RS07715 0.65 -0.3 1,931,599 - CA265_RS07715 0.66 +0.2 1,931,692 + CA265_RS07715 0.76 -2.3 1,931,700 - CA265_RS07715 0.77 +0.5 1,931,706 - CA265_RS07715 0.78 -0.9 1,931,736 + CA265_RS07715 0.81 -1.0 1,931,736 + CA265_RS07715 0.81 -0.2 1,931,838 - -1.2 1,931,888 + -0.2 1,931,941 - -0.9 1,931,948 + -0.5 1,931,949 - -1.5 1,931,957 + +0.5 1,932,675 + -0.5 1,932,683 - -0.5 1,932,694 - -1.2 1,932,786 - CA265_RS07725 0.15 -0.3 1,932,824 - CA265_RS07725 0.22 -1.0
Or see this region's nucleotide sequence