Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS06215 and CA265_RS06220 are separated by 170 nucleotides CA265_RS06220 and CA265_RS06225 are separated by 87 nucleotides
CA265_RS06215: CA265_RS06215 - inositol monophosphatase, at 1,533,208 to 1,533,999
_RS06215
CA265_RS06220: CA265_RS06220 - NifU family protein, at 1,534,170 to 1,534,721
_RS06220
CA265_RS06225: CA265_RS06225 - adenylosuccinate lyase, at 1,534,809 to 1,536,155
_RS06225
Position (kb)
1534
1535 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1533.170 kb on - strand at 1533.204 kb on - strand at 1533.207 kb on + strand at 1533.214 kb on + strand at 1533.222 kb on - strand at 1533.306 kb on - strand, within CA265_RS06215 at 1533.327 kb on + strand, within CA265_RS06215 at 1533.445 kb on + strand, within CA265_RS06215 at 1533.447 kb on + strand, within CA265_RS06215 at 1533.513 kb on + strand, within CA265_RS06215 at 1533.527 kb on - strand, within CA265_RS06215 at 1533.587 kb on - strand, within CA265_RS06215 at 1533.593 kb on - strand, within CA265_RS06215 at 1533.593 kb on - strand, within CA265_RS06215 at 1533.691 kb on - strand, within CA265_RS06215 at 1533.716 kb on + strand, within CA265_RS06215 at 1533.864 kb on + strand, within CA265_RS06215 at 1533.864 kb on + strand, within CA265_RS06215 at 1533.865 kb on - strand, within CA265_RS06215 at 1533.890 kb on + strand, within CA265_RS06215 at 1533.892 kb on + strand, within CA265_RS06215 at 1533.893 kb on - strand, within CA265_RS06215 at 1533.957 kb on - strand at 1533.957 kb on - strand at 1533.994 kb on - strand at 1534.049 kb on + strand at 1534.050 kb on - strand at 1534.050 kb on - strand at 1534.050 kb on - strand at 1534.091 kb on + strand at 1534.092 kb on - strand at 1534.144 kb on - strand at 1534.145 kb on + strand at 1534.146 kb on - strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.147 kb on + strand at 1534.253 kb on + strand, within CA265_RS06220 at 1534.285 kb on - strand, within CA265_RS06220 at 1534.490 kb on + strand, within CA265_RS06220 at 1534.650 kb on + strand, within CA265_RS06220 at 1534.650 kb on + strand, within CA265_RS06220 at 1534.662 kb on + strand, within CA265_RS06220 at 1534.766 kb on + strand at 1534.778 kb on + strand at 1534.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,533,170 - -0.6 1,533,204 - -1.7 1,533,207 + +0.2 1,533,214 + +0.4 1,533,222 - -0.1 1,533,306 - CA265_RS06215 0.12 +0.9 1,533,327 + CA265_RS06215 0.15 +0.7 1,533,445 + CA265_RS06215 0.30 +0.4 1,533,447 + CA265_RS06215 0.30 +0.9 1,533,513 + CA265_RS06215 0.39 +1.3 1,533,527 - CA265_RS06215 0.40 -0.7 1,533,587 - CA265_RS06215 0.48 +0.0 1,533,593 - CA265_RS06215 0.49 -0.4 1,533,593 - CA265_RS06215 0.49 -0.3 1,533,691 - CA265_RS06215 0.61 -1.0 1,533,716 + CA265_RS06215 0.64 +1.0 1,533,864 + CA265_RS06215 0.83 -0.2 1,533,864 + CA265_RS06215 0.83 -0.8 1,533,865 - CA265_RS06215 0.83 +0.3 1,533,890 + CA265_RS06215 0.86 +0.1 1,533,892 + CA265_RS06215 0.86 -0.1 1,533,893 - CA265_RS06215 0.86 +0.5 1,533,957 - +1.3 1,533,957 - +0.6 1,533,994 - +0.5 1,534,049 + -1.2 1,534,050 - +0.7 1,534,050 - -0.2 1,534,050 - +0.4 1,534,091 + -0.2 1,534,092 - +0.7 1,534,144 - +0.5 1,534,145 + -1.4 1,534,146 - +0.8 1,534,147 + +0.1 1,534,147 + +0.9 1,534,147 + -0.5 1,534,147 + +0.2 1,534,147 + +0.6 1,534,147 + -0.2 1,534,147 + -1.0 1,534,253 + CA265_RS06220 0.15 -1.6 1,534,285 - CA265_RS06220 0.21 +0.4 1,534,490 + CA265_RS06220 0.58 -0.5 1,534,650 + CA265_RS06220 0.87 -3.1 1,534,650 + CA265_RS06220 0.87 -2.4 1,534,662 + CA265_RS06220 0.89 -0.8 1,534,766 + +0.7 1,534,778 + -0.4 1,534,778 + -0.4
Or see this region's nucleotide sequence