Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06220

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06215 and CA265_RS06220 are separated by 170 nucleotidesCA265_RS06220 and CA265_RS06225 are separated by 87 nucleotides CA265_RS06215: CA265_RS06215 - inositol monophosphatase, at 1,533,208 to 1,533,999 _RS06215 CA265_RS06220: CA265_RS06220 - NifU family protein, at 1,534,170 to 1,534,721 _RS06220 CA265_RS06225: CA265_RS06225 - adenylosuccinate lyase, at 1,534,809 to 1,536,155 _RS06225 Position (kb) 1534 1535Strain fitness (log2 ratio) -3 -2 -1 0 1at 1533.170 kb on - strandat 1533.204 kb on - strandat 1533.207 kb on + strandat 1533.214 kb on + strandat 1533.222 kb on - strandat 1533.306 kb on - strand, within CA265_RS06215at 1533.327 kb on + strand, within CA265_RS06215at 1533.445 kb on + strand, within CA265_RS06215at 1533.447 kb on + strand, within CA265_RS06215at 1533.513 kb on + strand, within CA265_RS06215at 1533.527 kb on - strand, within CA265_RS06215at 1533.587 kb on - strand, within CA265_RS06215at 1533.593 kb on - strand, within CA265_RS06215at 1533.593 kb on - strand, within CA265_RS06215at 1533.691 kb on - strand, within CA265_RS06215at 1533.716 kb on + strand, within CA265_RS06215at 1533.864 kb on + strand, within CA265_RS06215at 1533.864 kb on + strand, within CA265_RS06215at 1533.865 kb on - strand, within CA265_RS06215at 1533.890 kb on + strand, within CA265_RS06215at 1533.892 kb on + strand, within CA265_RS06215at 1533.893 kb on - strand, within CA265_RS06215at 1533.957 kb on - strandat 1533.957 kb on - strandat 1533.994 kb on - strandat 1534.049 kb on + strandat 1534.050 kb on - strandat 1534.050 kb on - strandat 1534.050 kb on - strandat 1534.091 kb on + strandat 1534.092 kb on - strandat 1534.144 kb on - strandat 1534.145 kb on + strandat 1534.146 kb on - strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.147 kb on + strandat 1534.253 kb on + strand, within CA265_RS06220at 1534.285 kb on - strand, within CA265_RS06220at 1534.490 kb on + strand, within CA265_RS06220at 1534.650 kb on + strand, within CA265_RS06220at 1534.650 kb on + strand, within CA265_RS06220at 1534.662 kb on + strand, within CA265_RS06220at 1534.766 kb on + strandat 1534.778 kb on + strandat 1534.778 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,533,170 - -0.6
1,533,204 - -1.7
1,533,207 + +0.2
1,533,214 + +0.4
1,533,222 - -0.1
1,533,306 - CA265_RS06215 0.12 +0.9
1,533,327 + CA265_RS06215 0.15 +0.7
1,533,445 + CA265_RS06215 0.30 +0.4
1,533,447 + CA265_RS06215 0.30 +0.9
1,533,513 + CA265_RS06215 0.39 +1.3
1,533,527 - CA265_RS06215 0.40 -0.7
1,533,587 - CA265_RS06215 0.48 +0.0
1,533,593 - CA265_RS06215 0.49 -0.4
1,533,593 - CA265_RS06215 0.49 -0.3
1,533,691 - CA265_RS06215 0.61 -1.0
1,533,716 + CA265_RS06215 0.64 +1.0
1,533,864 + CA265_RS06215 0.83 -0.2
1,533,864 + CA265_RS06215 0.83 -0.8
1,533,865 - CA265_RS06215 0.83 +0.3
1,533,890 + CA265_RS06215 0.86 +0.1
1,533,892 + CA265_RS06215 0.86 -0.1
1,533,893 - CA265_RS06215 0.86 +0.5
1,533,957 - +1.3
1,533,957 - +0.6
1,533,994 - +0.5
1,534,049 + -1.2
1,534,050 - +0.7
1,534,050 - -0.2
1,534,050 - +0.4
1,534,091 + -0.2
1,534,092 - +0.7
1,534,144 - +0.5
1,534,145 + -1.4
1,534,146 - +0.8
1,534,147 + +0.1
1,534,147 + +0.9
1,534,147 + -0.5
1,534,147 + +0.2
1,534,147 + +0.6
1,534,147 + -0.2
1,534,147 + -1.0
1,534,253 + CA265_RS06220 0.15 -1.6
1,534,285 - CA265_RS06220 0.21 +0.4
1,534,490 + CA265_RS06220 0.58 -0.5
1,534,650 + CA265_RS06220 0.87 -3.1
1,534,650 + CA265_RS06220 0.87 -2.4
1,534,662 + CA265_RS06220 0.89 -0.8
1,534,766 + +0.7
1,534,778 + -0.4
1,534,778 + -0.4

Or see this region's nucleotide sequence