Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06080

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06075 and CA265_RS06080 are separated by 107 nucleotidesCA265_RS06080 and CA265_RS06085 are separated by 281 nucleotides CA265_RS06075: CA265_RS06075 - beta-glucanase, at 1,494,532 to 1,495,650 _RS06075 CA265_RS06080: CA265_RS06080 - beta-galactosidase, at 1,495,758 to 1,497,593 _RS06080 CA265_RS06085: CA265_RS06085 - hypothetical protein, at 1,497,875 to 1,500,961 _RS06085 Position (kb) 1495 1496 1497 1498Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1494.762 kb on - strand, within CA265_RS06075at 1494.762 kb on - strand, within CA265_RS06075at 1494.794 kb on - strand, within CA265_RS06075at 1494.855 kb on + strand, within CA265_RS06075at 1494.864 kb on + strand, within CA265_RS06075at 1494.890 kb on - strand, within CA265_RS06075at 1495.000 kb on + strand, within CA265_RS06075at 1495.002 kb on + strand, within CA265_RS06075at 1495.002 kb on + strand, within CA265_RS06075at 1495.002 kb on + strand, within CA265_RS06075at 1495.049 kb on - strand, within CA265_RS06075at 1495.049 kb on - strand, within CA265_RS06075at 1495.238 kb on + strand, within CA265_RS06075at 1495.282 kb on + strand, within CA265_RS06075at 1495.282 kb on + strand, within CA265_RS06075at 1495.282 kb on + strand, within CA265_RS06075at 1495.337 kb on - strand, within CA265_RS06075at 1495.337 kb on - strand, within CA265_RS06075at 1495.420 kb on + strand, within CA265_RS06075at 1495.452 kb on + strand, within CA265_RS06075at 1495.477 kb on - strand, within CA265_RS06075at 1495.477 kb on - strand, within CA265_RS06075at 1495.477 kb on - strand, within CA265_RS06075at 1495.564 kb on + strandat 1495.564 kb on + strandat 1495.565 kb on - strandat 1495.569 kb on - strandat 1495.642 kb on - strandat 1495.666 kb on + strandat 1495.708 kb on + strandat 1495.765 kb on + strandat 1495.897 kb on + strandat 1495.898 kb on - strandat 1495.898 kb on - strandat 1496.149 kb on + strand, within CA265_RS06080at 1496.206 kb on - strand, within CA265_RS06080at 1496.249 kb on - strand, within CA265_RS06080at 1496.276 kb on + strand, within CA265_RS06080at 1496.276 kb on + strand, within CA265_RS06080at 1496.308 kb on - strand, within CA265_RS06080at 1496.330 kb on - strand, within CA265_RS06080at 1496.333 kb on + strand, within CA265_RS06080at 1496.334 kb on - strand, within CA265_RS06080at 1496.336 kb on - strand, within CA265_RS06080at 1496.381 kb on + strand, within CA265_RS06080at 1496.405 kb on - strandat 1496.419 kb on + strand, within CA265_RS06080at 1496.419 kb on + strand, within CA265_RS06080at 1496.480 kb on - strand, within CA265_RS06080at 1496.583 kb on + strand, within CA265_RS06080at 1496.634 kb on + strand, within CA265_RS06080at 1496.635 kb on - strand, within CA265_RS06080at 1496.679 kb on - strand, within CA265_RS06080at 1496.683 kb on - strand, within CA265_RS06080at 1496.690 kb on + strand, within CA265_RS06080at 1496.690 kb on + strand, within CA265_RS06080at 1496.721 kb on + strand, within CA265_RS06080at 1496.721 kb on + strand, within CA265_RS06080at 1496.721 kb on + strand, within CA265_RS06080at 1496.727 kb on + strand, within CA265_RS06080at 1496.740 kb on + strand, within CA265_RS06080at 1496.958 kb on + strand, within CA265_RS06080at 1496.959 kb on - strand, within CA265_RS06080at 1497.069 kb on - strand, within CA265_RS06080at 1497.107 kb on - strand, within CA265_RS06080at 1497.128 kb on - strand, within CA265_RS06080at 1497.177 kb on + strand, within CA265_RS06080at 1497.181 kb on + strand, within CA265_RS06080at 1497.287 kb on + strand, within CA265_RS06080at 1497.287 kb on + strand, within CA265_RS06080at 1497.325 kb on + strand, within CA265_RS06080at 1497.362 kb on + strand, within CA265_RS06080at 1497.366 kb on + strand, within CA265_RS06080at 1497.367 kb on - strand, within CA265_RS06080at 1497.370 kb on + strand, within CA265_RS06080at 1497.370 kb on + strand, within CA265_RS06080at 1497.370 kb on + strand, within CA265_RS06080at 1497.374 kb on + strand, within CA265_RS06080at 1497.421 kb on + strandat 1497.458 kb on - strandat 1497.459 kb on + strandat 1497.459 kb on + strandat 1497.460 kb on - strandat 1497.460 kb on - strandat 1497.460 kb on - strandat 1497.500 kb on + strandat 1497.562 kb on + strandat 1497.567 kb on - strandat 1497.622 kb on - strandat 1497.663 kb on + strandat 1497.663 kb on + strandat 1497.664 kb on - strandat 1497.664 kb on - strandat 1497.673 kb on - strandat 1497.741 kb on - strandat 1497.977 kb on - strandat 1497.985 kb on + strandat 1497.986 kb on - strandat 1497.986 kb on - strandat 1497.992 kb on - strandat 1498.076 kb on - strandat 1498.116 kb on + strandat 1498.117 kb on - strandat 1498.121 kb on + strandat 1498.149 kb on - strandat 1498.311 kb on - strand, within CA265_RS06085at 1498.380 kb on + strand, within CA265_RS06085at 1498.380 kb on + strand, within CA265_RS06085at 1498.381 kb on - strand, within CA265_RS06085at 1498.381 kb on - strand, within CA265_RS06085at 1498.382 kb on + strand, within CA265_RS06085at 1498.382 kb on + strand, within CA265_RS06085at 1498.383 kb on - strand, within CA265_RS06085at 1498.385 kb on - strand, within CA265_RS06085at 1498.385 kb on - strand, within CA265_RS06085at 1498.385 kb on - strand, within CA265_RS06085at 1498.477 kb on + strand, within CA265_RS06085at 1498.524 kb on + strand, within CA265_RS06085at 1498.525 kb on - strand, within CA265_RS06085

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,494,762 - CA265_RS06075 0.21 -0.8
1,494,762 - CA265_RS06075 0.21 +1.3
1,494,794 - CA265_RS06075 0.23 +1.2
1,494,855 + CA265_RS06075 0.29 -1.9
1,494,864 + CA265_RS06075 0.30 -0.4
1,494,890 - CA265_RS06075 0.32 -0.4
1,495,000 + CA265_RS06075 0.42 +0.2
1,495,002 + CA265_RS06075 0.42 -1.3
1,495,002 + CA265_RS06075 0.42 +1.0
1,495,002 + CA265_RS06075 0.42 +0.8
1,495,049 - CA265_RS06075 0.46 -0.3
1,495,049 - CA265_RS06075 0.46 +0.6
1,495,238 + CA265_RS06075 0.63 +0.2
1,495,282 + CA265_RS06075 0.67 -0.7
1,495,282 + CA265_RS06075 0.67 +1.1
1,495,282 + CA265_RS06075 0.67 -0.2
1,495,337 - CA265_RS06075 0.72 -0.4
1,495,337 - CA265_RS06075 0.72 +0.1
1,495,420 + CA265_RS06075 0.79 -1.1
1,495,452 + CA265_RS06075 0.82 -1.0
1,495,477 - CA265_RS06075 0.84 -0.7
1,495,477 - CA265_RS06075 0.84 -0.8
1,495,477 - CA265_RS06075 0.84 -0.1
1,495,564 + +1.3
1,495,564 + -0.4
1,495,565 - +0.3
1,495,569 - -0.1
1,495,642 - -0.9
1,495,666 + -0.5
1,495,708 + +0.1
1,495,765 + -0.1
1,495,897 + -1.7
1,495,898 - -0.0
1,495,898 - +1.0
1,496,149 + CA265_RS06080 0.21 +0.2
1,496,206 - CA265_RS06080 0.24 -0.2
1,496,249 - CA265_RS06080 0.27 +0.4
1,496,276 + CA265_RS06080 0.28 +0.8
1,496,276 + CA265_RS06080 0.28 -2.0
1,496,308 - CA265_RS06080 0.30 -0.4
1,496,330 - CA265_RS06080 0.31 +0.1
1,496,333 + CA265_RS06080 0.31 -0.9
1,496,334 - CA265_RS06080 0.31 +0.1
1,496,336 - CA265_RS06080 0.31 +0.2
1,496,381 + CA265_RS06080 0.34 +0.4
1,496,405 - +0.2
1,496,419 + CA265_RS06080 0.36 +0.9
1,496,419 + CA265_RS06080 0.36 +0.7
1,496,480 - CA265_RS06080 0.39 +0.1
1,496,583 + CA265_RS06080 0.45 +1.4
1,496,634 + CA265_RS06080 0.48 -2.2
1,496,635 - CA265_RS06080 0.48 +2.9
1,496,679 - CA265_RS06080 0.50 -0.2
1,496,683 - CA265_RS06080 0.50 +0.6
1,496,690 + CA265_RS06080 0.51 +0.4
1,496,690 + CA265_RS06080 0.51 -0.0
1,496,721 + CA265_RS06080 0.52 -0.2
1,496,721 + CA265_RS06080 0.52 -0.3
1,496,721 + CA265_RS06080 0.52 +0.4
1,496,727 + CA265_RS06080 0.53 -0.6
1,496,740 + CA265_RS06080 0.53 -0.6
1,496,958 + CA265_RS06080 0.65 -1.2
1,496,959 - CA265_RS06080 0.65 +0.6
1,497,069 - CA265_RS06080 0.71 -0.4
1,497,107 - CA265_RS06080 0.73 +1.9
1,497,128 - CA265_RS06080 0.75 -0.8
1,497,177 + CA265_RS06080 0.77 +0.9
1,497,181 + CA265_RS06080 0.78 -0.1
1,497,287 + CA265_RS06080 0.83 -0.0
1,497,287 + CA265_RS06080 0.83 -0.5
1,497,325 + CA265_RS06080 0.85 -0.4
1,497,362 + CA265_RS06080 0.87 +0.5
1,497,366 + CA265_RS06080 0.88 +0.8
1,497,367 - CA265_RS06080 0.88 +0.1
1,497,370 + CA265_RS06080 0.88 -0.2
1,497,370 + CA265_RS06080 0.88 -0.8
1,497,370 + CA265_RS06080 0.88 -0.0
1,497,374 + CA265_RS06080 0.88 -1.1
1,497,421 + +0.9
1,497,458 - -0.4
1,497,459 + -1.2
1,497,459 + -0.4
1,497,460 - +0.6
1,497,460 - -0.2
1,497,460 - +1.2
1,497,500 + -0.9
1,497,562 + -2.5
1,497,567 - -1.0
1,497,622 - +0.5
1,497,663 + -0.5
1,497,663 + +0.3
1,497,664 - +2.5
1,497,664 - -1.4
1,497,673 - +0.9
1,497,741 - -1.1
1,497,977 - +1.7
1,497,985 + -0.4
1,497,986 - +0.3
1,497,986 - +0.2
1,497,992 - -1.3
1,498,076 - -1.0
1,498,116 + +0.3
1,498,117 - -2.0
1,498,121 + +0.8
1,498,149 - -0.0
1,498,311 - CA265_RS06085 0.14 +0.6
1,498,380 + CA265_RS06085 0.16 -1.0
1,498,380 + CA265_RS06085 0.16 -0.1
1,498,381 - CA265_RS06085 0.16 +0.7
1,498,381 - CA265_RS06085 0.16 +1.4
1,498,382 + CA265_RS06085 0.16 -1.7
1,498,382 + CA265_RS06085 0.16 +0.2
1,498,383 - CA265_RS06085 0.16 -0.1
1,498,385 - CA265_RS06085 0.17 -0.2
1,498,385 - CA265_RS06085 0.17 -0.4
1,498,385 - CA265_RS06085 0.17 -0.8
1,498,477 + CA265_RS06085 0.20 -0.1
1,498,524 + CA265_RS06085 0.21 +0.6
1,498,525 - CA265_RS06085 0.21 -0.3

Or see this region's nucleotide sequence