Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04395 and CA265_RS04400 are separated by 109 nucleotides CA265_RS04400 and CA265_RS04405 are separated by 176 nucleotides
CA265_RS04395: CA265_RS04395 - heptosyltransferase, at 1,054,767 to 1,055,798
_RS04395
CA265_RS04400: CA265_RS04400 - hypothetical protein, at 1,055,908 to 1,056,510
_RS04400
CA265_RS04405: CA265_RS04405 - DNA polymerase/3'-5' exonuclease PolX, at 1,056,687 to 1,058,363
_RS04405
Position (kb)
1055
1056
1057 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1054.942 kb on + strand, within CA265_RS04395 at 1055.018 kb on + strand, within CA265_RS04395 at 1055.023 kb on - strand, within CA265_RS04395 at 1055.027 kb on + strand, within CA265_RS04395 at 1055.028 kb on + strand, within CA265_RS04395 at 1055.028 kb on + strand, within CA265_RS04395 at 1055.029 kb on - strand, within CA265_RS04395 at 1055.253 kb on - strand, within CA265_RS04395 at 1055.253 kb on - strand, within CA265_RS04395 at 1055.276 kb on - strand, within CA265_RS04395 at 1055.348 kb on + strand, within CA265_RS04395 at 1055.349 kb on - strand, within CA265_RS04395 at 1055.460 kb on + strand, within CA265_RS04395 at 1055.460 kb on + strand, within CA265_RS04395 at 1055.461 kb on - strand, within CA265_RS04395 at 1055.582 kb on - strand, within CA265_RS04395 at 1055.606 kb on + strand, within CA265_RS04395 at 1055.645 kb on + strand, within CA265_RS04395 at 1055.769 kb on + strand at 1055.848 kb on + strand at 1055.848 kb on + strand at 1055.870 kb on + strand at 1055.903 kb on + strand at 1055.906 kb on + strand at 1055.907 kb on - strand at 1055.909 kb on + strand at 1055.910 kb on - strand at 1055.916 kb on + strand at 1055.919 kb on + strand at 1055.921 kb on + strand at 1055.922 kb on - strand at 1055.968 kb on - strand at 1055.971 kb on + strand, within CA265_RS04400 at 1056.052 kb on + strand, within CA265_RS04400 at 1056.055 kb on + strand, within CA265_RS04400 at 1056.056 kb on - strand, within CA265_RS04400 at 1056.126 kb on + strand, within CA265_RS04400 at 1056.126 kb on + strand, within CA265_RS04400 at 1056.150 kb on + strand, within CA265_RS04400 at 1056.163 kb on + strand, within CA265_RS04400 at 1056.240 kb on - strand, within CA265_RS04400 at 1056.290 kb on - strand, within CA265_RS04400 at 1056.336 kb on + strand, within CA265_RS04400 at 1056.340 kb on + strand, within CA265_RS04400 at 1056.341 kb on - strand, within CA265_RS04400 at 1056.341 kb on - strand, within CA265_RS04400 at 1056.462 kb on - strand at 1056.468 kb on + strand at 1056.522 kb on - strand at 1056.629 kb on + strand at 1056.698 kb on + strand at 1056.698 kb on + strand at 1056.698 kb on + strand at 1056.709 kb on + strand at 1056.718 kb on - strand at 1056.759 kb on + strand at 1056.780 kb on + strand at 1056.815 kb on + strand at 1056.846 kb on + strand at 1056.846 kb on + strand at 1056.847 kb on - strand at 1056.847 kb on - strand at 1056.847 kb on - strand at 1056.987 kb on + strand, within CA265_RS04405 at 1056.993 kb on + strand, within CA265_RS04405 at 1057.014 kb on + strand, within CA265_RS04405 at 1057.025 kb on + strand, within CA265_RS04405 at 1057.025 kb on + strand, within CA265_RS04405 at 1057.026 kb on - strand, within CA265_RS04405 at 1057.027 kb on + strand, within CA265_RS04405 at 1057.131 kb on - strand, within CA265_RS04405 at 1057.260 kb on + strand, within CA265_RS04405 at 1057.261 kb on - strand, within CA265_RS04405 at 1057.287 kb on - strand, within CA265_RS04405 at 1057.305 kb on + strand, within CA265_RS04405 at 1057.320 kb on + strand, within CA265_RS04405 at 1057.336 kb on + strand, within CA265_RS04405 at 1057.359 kb on - strand, within CA265_RS04405 at 1057.359 kb on - strand, within CA265_RS04405 at 1057.359 kb on - strand, within CA265_RS04405 at 1057.362 kb on + strand, within CA265_RS04405 at 1057.363 kb on - strand, within CA265_RS04405 at 1057.415 kb on - strand, within CA265_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,054,942 + CA265_RS04395 0.17 -3.2 1,055,018 + CA265_RS04395 0.24 -2.0 1,055,023 - CA265_RS04395 0.25 -1.3 1,055,027 + CA265_RS04395 0.25 -1.0 1,055,028 + CA265_RS04395 0.25 -2.5 1,055,028 + CA265_RS04395 0.25 -3.2 1,055,029 - CA265_RS04395 0.25 -2.4 1,055,253 - CA265_RS04395 0.47 -1.9 1,055,253 - CA265_RS04395 0.47 -1.8 1,055,276 - CA265_RS04395 0.49 -2.3 1,055,348 + CA265_RS04395 0.56 -2.1 1,055,349 - CA265_RS04395 0.56 -2.3 1,055,460 + CA265_RS04395 0.67 -0.8 1,055,460 + CA265_RS04395 0.67 -2.8 1,055,461 - CA265_RS04395 0.67 -1.8 1,055,582 - CA265_RS04395 0.79 -3.6 1,055,606 + CA265_RS04395 0.81 -3.4 1,055,645 + CA265_RS04395 0.85 -2.7 1,055,769 + -3.3 1,055,848 + +1.7 1,055,848 + +1.6 1,055,870 + +0.5 1,055,903 + +0.5 1,055,906 + +0.5 1,055,907 - -0.5 1,055,909 + -0.9 1,055,910 - -1.7 1,055,916 + +0.1 1,055,919 + +1.2 1,055,921 + -0.8 1,055,922 - -2.8 1,055,968 - -1.8 1,055,971 + CA265_RS04400 0.10 -3.8 1,056,052 + CA265_RS04400 0.24 -3.8 1,056,055 + CA265_RS04400 0.24 -3.0 1,056,056 - CA265_RS04400 0.25 -2.2 1,056,126 + CA265_RS04400 0.36 -1.0 1,056,126 + CA265_RS04400 0.36 -0.3 1,056,150 + CA265_RS04400 0.40 +0.5 1,056,163 + CA265_RS04400 0.42 -1.1 1,056,240 - CA265_RS04400 0.55 -2.1 1,056,290 - CA265_RS04400 0.63 -2.1 1,056,336 + CA265_RS04400 0.71 -2.5 1,056,340 + CA265_RS04400 0.72 -2.6 1,056,341 - CA265_RS04400 0.72 -1.5 1,056,341 - CA265_RS04400 0.72 -2.9 1,056,462 - -0.9 1,056,468 + -1.8 1,056,522 - +1.4 1,056,629 + -0.1 1,056,698 + +0.8 1,056,698 + +0.2 1,056,698 + +0.4 1,056,709 + -0.6 1,056,718 - +0.5 1,056,759 + +1.0 1,056,780 + -0.2 1,056,815 + -1.4 1,056,846 + -1.1 1,056,846 + +1.5 1,056,847 - -0.8 1,056,847 - +1.5 1,056,847 - -1.1 1,056,987 + CA265_RS04405 0.18 +0.7 1,056,993 + CA265_RS04405 0.18 -1.1 1,057,014 + CA265_RS04405 0.19 +0.3 1,057,025 + CA265_RS04405 0.20 +0.1 1,057,025 + CA265_RS04405 0.20 -0.6 1,057,026 - CA265_RS04405 0.20 -0.5 1,057,027 + CA265_RS04405 0.20 +0.3 1,057,131 - CA265_RS04405 0.26 +0.2 1,057,260 + CA265_RS04405 0.34 -0.9 1,057,261 - CA265_RS04405 0.34 -0.6 1,057,287 - CA265_RS04405 0.36 +0.3 1,057,305 + CA265_RS04405 0.37 -0.6 1,057,320 + CA265_RS04405 0.38 -1.0 1,057,336 + CA265_RS04405 0.39 +1.1 1,057,359 - CA265_RS04405 0.40 -0.7 1,057,359 - CA265_RS04405 0.40 -1.0 1,057,359 - CA265_RS04405 0.40 +0.3 1,057,362 + CA265_RS04405 0.40 -0.1 1,057,363 - CA265_RS04405 0.40 -0.1 1,057,415 - CA265_RS04405 0.43 +0.2
Or see this region's nucleotide sequence