Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04025

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04020 and CA265_RS04025 are separated by 275 nucleotidesCA265_RS04025 and CA265_RS04030 are separated by 87 nucleotides CA265_RS04020: CA265_RS04020 - hypothetical protein, at 961,941 to 963,233 _RS04020 CA265_RS04025: CA265_RS04025 - glycoside hydrolase family 2, at 963,509 to 966,673 _RS04025 CA265_RS04030: CA265_RS04030 - alpha-galactosidase, at 966,761 to 967,960 _RS04030 Position (kb) 963 964 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 962.605 kb on - strand, within CA265_RS04020at 962.607 kb on - strand, within CA265_RS04020at 962.625 kb on + strand, within CA265_RS04020at 962.626 kb on - strand, within CA265_RS04020at 962.637 kb on - strand, within CA265_RS04020at 962.671 kb on + strand, within CA265_RS04020at 962.726 kb on + strand, within CA265_RS04020at 962.727 kb on - strand, within CA265_RS04020at 962.772 kb on - strand, within CA265_RS04020at 962.772 kb on - strand, within CA265_RS04020at 962.774 kb on - strand, within CA265_RS04020at 962.838 kb on - strand, within CA265_RS04020at 962.873 kb on - strand, within CA265_RS04020at 962.935 kb on - strand, within CA265_RS04020at 962.948 kb on + strand, within CA265_RS04020at 963.042 kb on + strand, within CA265_RS04020at 963.043 kb on - strand, within CA265_RS04020at 963.080 kb on - strand, within CA265_RS04020at 963.263 kb on + strandat 963.264 kb on - strandat 963.465 kb on - strandat 963.465 kb on - strandat 963.487 kb on + strandat 963.498 kb on - strandat 963.500 kb on - strandat 963.543 kb on + strandat 963.670 kb on + strandat 963.757 kb on + strandat 963.830 kb on - strand, within CA265_RS04025at 963.855 kb on + strand, within CA265_RS04025at 963.888 kb on + strand, within CA265_RS04025at 963.931 kb on + strand, within CA265_RS04025at 963.931 kb on + strand, within CA265_RS04025at 963.932 kb on - strand, within CA265_RS04025at 964.008 kb on + strand, within CA265_RS04025at 964.008 kb on + strand, within CA265_RS04025at 964.009 kb on - strand, within CA265_RS04025at 964.063 kb on + strand, within CA265_RS04025at 964.063 kb on + strand, within CA265_RS04025at 964.064 kb on - strand, within CA265_RS04025at 964.073 kb on - strand, within CA265_RS04025at 964.076 kb on - strand, within CA265_RS04025at 964.076 kb on - strand, within CA265_RS04025at 964.107 kb on - strand, within CA265_RS04025at 964.145 kb on + strand, within CA265_RS04025at 964.146 kb on - strand, within CA265_RS04025at 964.146 kb on - strand, within CA265_RS04025at 964.167 kb on - strand, within CA265_RS04025at 964.204 kb on - strand, within CA265_RS04025at 964.204 kb on - strand, within CA265_RS04025at 964.218 kb on - strand, within CA265_RS04025at 964.221 kb on + strand, within CA265_RS04025at 964.243 kb on + strand, within CA265_RS04025at 964.285 kb on + strand, within CA265_RS04025at 964.286 kb on - strand, within CA265_RS04025at 964.306 kb on - strand, within CA265_RS04025at 964.375 kb on - strand, within CA265_RS04025at 964.444 kb on - strand, within CA265_RS04025at 964.451 kb on + strand, within CA265_RS04025at 964.452 kb on - strand, within CA265_RS04025at 964.486 kb on + strand, within CA265_RS04025at 964.521 kb on + strand, within CA265_RS04025at 964.521 kb on + strand, within CA265_RS04025at 964.522 kb on - strand, within CA265_RS04025at 964.532 kb on + strand, within CA265_RS04025at 964.533 kb on - strand, within CA265_RS04025at 964.563 kb on + strand, within CA265_RS04025at 964.660 kb on - strand, within CA265_RS04025at 964.675 kb on + strand, within CA265_RS04025at 964.693 kb on + strand, within CA265_RS04025at 964.694 kb on - strand, within CA265_RS04025at 964.694 kb on - strand, within CA265_RS04025at 964.749 kb on + strand, within CA265_RS04025at 964.750 kb on - strand, within CA265_RS04025at 964.750 kb on - strand, within CA265_RS04025at 964.859 kb on + strand, within CA265_RS04025at 964.859 kb on + strand, within CA265_RS04025at 964.862 kb on + strand, within CA265_RS04025at 964.892 kb on - strand, within CA265_RS04025at 964.981 kb on + strand, within CA265_RS04025at 965.019 kb on - strand, within CA265_RS04025at 965.019 kb on - strand, within CA265_RS04025at 965.167 kb on + strand, within CA265_RS04025at 965.168 kb on - strand, within CA265_RS04025at 965.219 kb on + strand, within CA265_RS04025at 965.220 kb on - strand, within CA265_RS04025at 965.246 kb on - strand, within CA265_RS04025at 965.278 kb on - strand, within CA265_RS04025at 965.369 kb on - strandat 965.402 kb on - strand, within CA265_RS04025at 965.402 kb on - strand, within CA265_RS04025at 965.449 kb on - strand, within CA265_RS04025at 965.456 kb on + strand, within CA265_RS04025at 965.457 kb on - strand, within CA265_RS04025at 965.458 kb on + strand, within CA265_RS04025at 965.462 kb on - strand, within CA265_RS04025at 965.503 kb on + strand, within CA265_RS04025at 965.504 kb on - strand, within CA265_RS04025at 965.532 kb on + strandat 965.532 kb on + strand, within CA265_RS04025at 965.533 kb on - strand, within CA265_RS04025at 965.538 kb on + strand, within CA265_RS04025at 965.539 kb on - strand, within CA265_RS04025at 965.591 kb on - strand, within CA265_RS04025at 965.625 kb on + strand, within CA265_RS04025at 965.626 kb on - strand, within CA265_RS04025at 965.626 kb on - strand, within CA265_RS04025at 965.648 kb on + strand, within CA265_RS04025at 965.723 kb on + strand, within CA265_RS04025at 965.777 kb on + strand, within CA265_RS04025at 965.849 kb on - strand, within CA265_RS04025at 965.888 kb on + strand, within CA265_RS04025at 965.889 kb on - strand, within CA265_RS04025at 965.889 kb on - strand, within CA265_RS04025at 965.988 kb on + strand, within CA265_RS04025at 965.989 kb on - strand, within CA265_RS04025at 966.007 kb on - strand, within CA265_RS04025at 966.016 kb on + strand, within CA265_RS04025at 966.022 kb on + strand, within CA265_RS04025at 966.022 kb on + strand, within CA265_RS04025at 966.023 kb on - strand, within CA265_RS04025at 966.028 kb on + strand, within CA265_RS04025at 966.035 kb on - strand, within CA265_RS04025at 966.044 kb on - strand, within CA265_RS04025at 966.073 kb on - strand, within CA265_RS04025at 966.090 kb on + strand, within CA265_RS04025at 966.091 kb on - strand, within CA265_RS04025at 966.153 kb on + strand, within CA265_RS04025at 966.166 kb on + strand, within CA265_RS04025at 966.167 kb on - strand, within CA265_RS04025at 966.250 kb on + strand, within CA265_RS04025at 966.252 kb on - strand, within CA265_RS04025at 966.300 kb on + strand, within CA265_RS04025at 966.308 kb on - strand, within CA265_RS04025at 966.308 kb on - strand, within CA265_RS04025at 966.314 kb on - strand, within CA265_RS04025at 966.370 kb on + strandat 966.404 kb on - strandat 966.483 kb on + strandat 966.529 kb on - strandat 966.570 kb on + strandat 966.571 kb on - strandat 966.602 kb on - strandat 966.650 kb on + strandat 966.651 kb on - strandat 966.654 kb on - strandat 966.656 kb on - strandat 966.671 kb on + strandat 966.672 kb on - strandat 966.704 kb on + strandat 966.705 kb on - strandat 966.737 kb on + strandat 966.737 kb on + strandat 966.737 kb on + strandat 966.756 kb on + strandat 966.756 kb on + strandat 966.757 kb on - strandat 966.789 kb on + strandat 966.895 kb on + strand, within CA265_RS04030at 967.039 kb on - strand, within CA265_RS04030at 967.088 kb on + strand, within CA265_RS04030at 967.089 kb on - strand, within CA265_RS04030at 967.123 kb on + strand, within CA265_RS04030at 967.184 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.294 kb on + strand, within CA265_RS04030at 967.295 kb on - strand, within CA265_RS04030at 967.352 kb on - strand, within CA265_RS04030at 967.367 kb on + strand, within CA265_RS04030at 967.368 kb on - strand, within CA265_RS04030at 967.381 kb on + strand, within CA265_RS04030at 967.381 kb on - strand, within CA265_RS04030at 967.417 kb on + strand, within CA265_RS04030at 967.417 kb on + strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.421 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.538 kb on - strand, within CA265_RS04030at 967.587 kb on - strand, within CA265_RS04030at 967.597 kb on + strand, within CA265_RS04030at 967.598 kb on - strand, within CA265_RS04030at 967.609 kb on - strand, within CA265_RS04030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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962,605 - CA265_RS04020 0.51 -0.4
962,607 - CA265_RS04020 0.52 -0.8
962,625 + CA265_RS04020 0.53 +0.1
962,626 - CA265_RS04020 0.53 +0.8
962,637 - CA265_RS04020 0.54 -0.3
962,671 + CA265_RS04020 0.56 +0.4
962,726 + CA265_RS04020 0.61 +0.4
962,727 - CA265_RS04020 0.61 -0.2
962,772 - CA265_RS04020 0.64 +0.2
962,772 - CA265_RS04020 0.64 +0.4
962,774 - CA265_RS04020 0.64 -0.8
962,838 - CA265_RS04020 0.69 +0.8
962,873 - CA265_RS04020 0.72 +0.4
962,935 - CA265_RS04020 0.77 +0.8
962,948 + CA265_RS04020 0.78 +0.7
963,042 + CA265_RS04020 0.85 +1.2
963,043 - CA265_RS04020 0.85 +1.9
963,080 - CA265_RS04020 0.88 +0.4
963,263 + -0.0
963,264 - -0.5
963,465 - +0.9
963,465 - +0.2
963,487 + +0.0
963,498 - +1.0
963,500 - -0.8
963,543 + -1.1
963,670 + -0.0
963,757 + +0.0
963,830 - CA265_RS04025 0.10 -2.2
963,855 + CA265_RS04025 0.11 +1.2
963,888 + CA265_RS04025 0.12 -0.9
963,931 + CA265_RS04025 0.13 -0.2
963,931 + CA265_RS04025 0.13 -0.3
963,932 - CA265_RS04025 0.13 +0.8
964,008 + CA265_RS04025 0.16 +0.7
964,008 + CA265_RS04025 0.16 +0.4
964,009 - CA265_RS04025 0.16 -0.4
964,063 + CA265_RS04025 0.18 +0.8
964,063 + CA265_RS04025 0.18 -0.2
964,064 - CA265_RS04025 0.18 +1.5
964,073 - CA265_RS04025 0.18 +1.0
964,076 - CA265_RS04025 0.18 +0.4
964,076 - CA265_RS04025 0.18 -2.2
964,107 - CA265_RS04025 0.19 -2.0
964,145 + CA265_RS04025 0.20 +0.5
964,146 - CA265_RS04025 0.20 -0.3
964,146 - CA265_RS04025 0.20 +0.3
964,167 - CA265_RS04025 0.21 +0.4
964,204 - CA265_RS04025 0.22 +1.0
964,204 - CA265_RS04025 0.22 -0.0
964,218 - CA265_RS04025 0.22 -0.6
964,221 + CA265_RS04025 0.22 -0.7
964,243 + CA265_RS04025 0.23 -0.4
964,285 + CA265_RS04025 0.25 +1.1
964,286 - CA265_RS04025 0.25 -1.0
964,306 - CA265_RS04025 0.25 -0.3
964,375 - CA265_RS04025 0.27 +0.0
964,444 - CA265_RS04025 0.30 +0.1
964,451 + CA265_RS04025 0.30 -0.1
964,452 - CA265_RS04025 0.30 -0.9
964,486 + CA265_RS04025 0.31 -0.8
964,521 + CA265_RS04025 0.32 -0.8
964,521 + CA265_RS04025 0.32 -0.2
964,522 - CA265_RS04025 0.32 -0.1
964,532 + CA265_RS04025 0.32 -0.1
964,533 - CA265_RS04025 0.32 +0.2
964,563 + CA265_RS04025 0.33 -0.8
964,660 - CA265_RS04025 0.36 +0.2
964,675 + CA265_RS04025 0.37 +1.4
964,693 + CA265_RS04025 0.37 +0.6
964,694 - CA265_RS04025 0.37 +0.7
964,694 - CA265_RS04025 0.37 +0.0
964,749 + CA265_RS04025 0.39 +0.4
964,750 - CA265_RS04025 0.39 -0.6
964,750 - CA265_RS04025 0.39 -1.7
964,859 + CA265_RS04025 0.43 -0.7
964,859 + CA265_RS04025 0.43 -1.5
964,862 + CA265_RS04025 0.43 +1.2
964,892 - CA265_RS04025 0.44 +0.3
964,981 + CA265_RS04025 0.47 -1.3
965,019 - CA265_RS04025 0.48 +0.9
965,019 - CA265_RS04025 0.48 -1.8
965,167 + CA265_RS04025 0.52 -0.2
965,168 - CA265_RS04025 0.52 +0.2
965,219 + CA265_RS04025 0.54 +0.1
965,220 - CA265_RS04025 0.54 +0.5
965,246 - CA265_RS04025 0.55 +0.4
965,278 - CA265_RS04025 0.56 +1.2
965,369 - +0.8
965,402 - CA265_RS04025 0.60 -0.8
965,402 - CA265_RS04025 0.60 +0.7
965,449 - CA265_RS04025 0.61 +0.2
965,456 + CA265_RS04025 0.62 +1.4
965,457 - CA265_RS04025 0.62 -0.2
965,458 + CA265_RS04025 0.62 +0.4
965,462 - CA265_RS04025 0.62 -0.4
965,503 + CA265_RS04025 0.63 -0.3
965,504 - CA265_RS04025 0.63 -0.4
965,532 + -0.4
965,532 + CA265_RS04025 0.64 -0.1
965,533 - CA265_RS04025 0.64 +0.0
965,538 + CA265_RS04025 0.64 +0.9
965,539 - CA265_RS04025 0.64 -0.6
965,591 - CA265_RS04025 0.66 +0.6
965,625 + CA265_RS04025 0.67 -1.0
965,626 - CA265_RS04025 0.67 +0.2
965,626 - CA265_RS04025 0.67 -0.2
965,648 + CA265_RS04025 0.68 +0.4
965,723 + CA265_RS04025 0.70 +1.0
965,777 + CA265_RS04025 0.72 +0.1
965,849 - CA265_RS04025 0.74 +0.1
965,888 + CA265_RS04025 0.75 -0.5
965,889 - CA265_RS04025 0.75 -0.2
965,889 - CA265_RS04025 0.75 +2.0
965,988 + CA265_RS04025 0.78 -0.1
965,989 - CA265_RS04025 0.78 +0.4
966,007 - CA265_RS04025 0.79 +0.7
966,016 + CA265_RS04025 0.79 -0.8
966,022 + CA265_RS04025 0.79 -0.1
966,022 + CA265_RS04025 0.79 +0.0
966,023 - CA265_RS04025 0.79 -0.2
966,028 + CA265_RS04025 0.80 -0.1
966,035 - CA265_RS04025 0.80 -0.6
966,044 - CA265_RS04025 0.80 +0.7
966,073 - CA265_RS04025 0.81 -0.5
966,090 + CA265_RS04025 0.82 +0.1
966,091 - CA265_RS04025 0.82 -0.8
966,153 + CA265_RS04025 0.84 -0.5
966,166 + CA265_RS04025 0.84 +0.6
966,167 - CA265_RS04025 0.84 -0.0
966,250 + CA265_RS04025 0.87 -1.1
966,252 - CA265_RS04025 0.87 +0.0
966,300 + CA265_RS04025 0.88 +2.0
966,308 - CA265_RS04025 0.88 +0.6
966,308 - CA265_RS04025 0.88 +0.5
966,314 - CA265_RS04025 0.89 -0.0
966,370 + -0.5
966,404 - -0.4
966,483 + -0.4
966,529 - +0.7
966,570 + +1.7
966,571 - -3.0
966,602 - -0.2
966,650 + +0.7
966,651 - -0.7
966,654 - +0.7
966,656 - +0.4
966,671 + +0.4
966,672 - -0.1
966,704 + -0.7
966,705 - +0.2
966,737 + -0.2
966,737 + +0.6
966,737 + -0.9
966,756 + -0.5
966,756 + -0.6
966,757 - +0.5
966,789 + -0.1
966,895 + CA265_RS04030 0.11 +0.1
967,039 - CA265_RS04030 0.23 +1.6
967,088 + CA265_RS04030 0.27 +0.5
967,089 - CA265_RS04030 0.27 +0.2
967,123 + CA265_RS04030 0.30 -1.3
967,184 + CA265_RS04030 0.35 +1.0
967,282 + CA265_RS04030 0.43 -1.7
967,282 + CA265_RS04030 0.43 +0.6
967,282 + CA265_RS04030 0.43 -0.2
967,282 + CA265_RS04030 0.43 -1.5
967,294 + CA265_RS04030 0.44 +0.7
967,295 - CA265_RS04030 0.45 +2.9
967,352 - CA265_RS04030 0.49 -0.3
967,367 + CA265_RS04030 0.51 +0.9
967,368 - CA265_RS04030 0.51 +0.6
967,381 + CA265_RS04030 0.52 +0.0
967,381 - CA265_RS04030 0.52 +0.3
967,417 + CA265_RS04030 0.55 -0.0
967,417 + CA265_RS04030 0.55 -1.4
967,418 - CA265_RS04030 0.55 -0.4
967,418 - CA265_RS04030 0.55 -1.8
967,418 - CA265_RS04030 0.55 -0.3
967,421 + CA265_RS04030 0.55 -0.1
967,506 + CA265_RS04030 0.62 -0.5
967,506 + CA265_RS04030 0.62 +0.5
967,506 + CA265_RS04030 0.62 +1.0
967,538 - CA265_RS04030 0.65 +0.3
967,587 - CA265_RS04030 0.69 +0.6
967,597 + CA265_RS04030 0.70 +0.0
967,598 - CA265_RS04030 0.70 +0.6
967,609 - CA265_RS04030 0.71 +0.6

Or see this region's nucleotide sequence