Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03475

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS03465 and CA265_RS03470 are separated by 31 nucleotidesCA265_RS03470 and CA265_RS03475 are separated by 662 nucleotidesCA265_RS03475 and CA265_RS03480 are separated by 565 nucleotides CA265_RS03465: CA265_RS03465 - ABC transporter permease, at 835,124 to 835,786 _RS03465 CA265_RS03470: CA265_RS03470 - CcmD family protein, at 835,818 to 836,006 _RS03470 CA265_RS03475: CA265_RS03475 - glutamate dehydrogenase, at 836,669 to 838,090 _RS03475 CA265_RS03480: CA265_RS03480 - hypothetical protein, at 838,656 to 840,056 _RS03480 Position (kb) 836 837 838 839Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 835.756 kb on + strandat 836.005 kb on - strandat 836.012 kb on + strandat 836.058 kb on - strandat 836.066 kb on + strandat 836.071 kb on + strandat 836.079 kb on + strandat 836.092 kb on + strandat 836.111 kb on + strandat 836.112 kb on - strandat 836.121 kb on + strandat 836.176 kb on + strandat 836.177 kb on - strandat 836.190 kb on - strandat 836.235 kb on - strandat 836.264 kb on - strandat 836.490 kb on + strandat 836.491 kb on - strandat 836.714 kb on - strandat 836.760 kb on + strandat 836.774 kb on - strandat 836.782 kb on + strandat 836.783 kb on - strandat 836.783 kb on - strandat 836.783 kb on - strandat 836.785 kb on + strandat 836.785 kb on + strandat 836.786 kb on - strandat 836.792 kb on + strandat 836.952 kb on - strand, within CA265_RS03475at 837.013 kb on + strand, within CA265_RS03475at 837.020 kb on + strand, within CA265_RS03475at 837.058 kb on + strand, within CA265_RS03475at 837.074 kb on - strand, within CA265_RS03475at 837.158 kb on - strand, within CA265_RS03475at 837.161 kb on + strand, within CA265_RS03475at 837.161 kb on + strand, within CA265_RS03475at 837.161 kb on + strand, within CA265_RS03475at 837.161 kb on + strand, within CA265_RS03475at 837.163 kb on + strand, within CA265_RS03475at 837.163 kb on + strand, within CA265_RS03475at 837.164 kb on - strand, within CA265_RS03475at 837.186 kb on + strand, within CA265_RS03475at 837.186 kb on + strand, within CA265_RS03475at 837.187 kb on - strand, within CA265_RS03475at 837.226 kb on - strand, within CA265_RS03475at 837.226 kb on - strand, within CA265_RS03475at 837.273 kb on - strand, within CA265_RS03475at 837.292 kb on - strand, within CA265_RS03475at 837.314 kb on - strand, within CA265_RS03475at 837.370 kb on + strand, within CA265_RS03475at 837.371 kb on - strand, within CA265_RS03475at 837.423 kb on + strand, within CA265_RS03475at 837.580 kb on - strand, within CA265_RS03475at 837.619 kb on + strand, within CA265_RS03475at 837.629 kb on - strand, within CA265_RS03475at 837.693 kb on + strand, within CA265_RS03475at 837.693 kb on + strand, within CA265_RS03475at 837.698 kb on - strand, within CA265_RS03475at 837.731 kb on + strand, within CA265_RS03475at 837.731 kb on + strand, within CA265_RS03475at 837.731 kb on + strand, within CA265_RS03475at 837.731 kb on + strand, within CA265_RS03475at 837.732 kb on - strand, within CA265_RS03475at 837.732 kb on - strand, within CA265_RS03475at 837.844 kb on - strand, within CA265_RS03475at 837.848 kb on - strand, within CA265_RS03475at 837.933 kb on + strand, within CA265_RS03475at 837.952 kb on + strandat 837.952 kb on + strandat 837.968 kb on + strandat 838.064 kb on + strandat 838.089 kb on - strandat 838.092 kb on - strandat 838.092 kb on - strandat 838.127 kb on - strandat 838.190 kb on - strandat 838.192 kb on + strandat 838.200 kb on - strandat 838.268 kb on - strandat 838.270 kb on + strandat 838.271 kb on - strandat 838.276 kb on + strandat 838.277 kb on - strandat 838.279 kb on + strandat 838.415 kb on + strandat 838.487 kb on - strandat 838.652 kb on + strandat 838.662 kb on - strandat 838.674 kb on - strandat 838.703 kb on + strandat 838.704 kb on - strandat 838.704 kb on - strandat 838.803 kb on + strand, within CA265_RS03480at 838.858 kb on - strand, within CA265_RS03480at 838.902 kb on - strand, within CA265_RS03480at 838.982 kb on + strand, within CA265_RS03480at 838.991 kb on + strand, within CA265_RS03480at 839.075 kb on + strand, within CA265_RS03480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
835,756 + +0.8
836,005 - -0.0
836,012 + +2.9
836,058 - +0.5
836,066 + -1.4
836,071 + +0.4
836,079 + -0.8
836,092 + -1.2
836,111 + +0.0
836,112 - -0.0
836,121 + +0.6
836,176 + -0.6
836,177 - -0.1
836,190 - -1.1
836,235 - -0.9
836,264 - -1.2
836,490 + +0.8
836,491 - -1.0
836,714 - -1.5
836,760 + -2.2
836,774 - -1.8
836,782 + -2.1
836,783 - -2.4
836,783 - -1.2
836,783 - -2.4
836,785 + -0.4
836,785 + +1.7
836,786 - -2.2
836,792 + -1.0
836,952 - CA265_RS03475 0.20 -1.9
837,013 + CA265_RS03475 0.24 -0.2
837,020 + CA265_RS03475 0.25 +0.1
837,058 + CA265_RS03475 0.27 -0.2
837,074 - CA265_RS03475 0.28 -1.7
837,158 - CA265_RS03475 0.34 -1.3
837,161 + CA265_RS03475 0.35 -2.4
837,161 + CA265_RS03475 0.35 +0.6
837,161 + CA265_RS03475 0.35 -2.2
837,161 + CA265_RS03475 0.35 -2.6
837,163 + CA265_RS03475 0.35 -1.5
837,163 + CA265_RS03475 0.35 -4.4
837,164 - CA265_RS03475 0.35 -1.0
837,186 + CA265_RS03475 0.36 -2.0
837,186 + CA265_RS03475 0.36 -3.1
837,187 - CA265_RS03475 0.36 -2.6
837,226 - CA265_RS03475 0.39 -1.8
837,226 - CA265_RS03475 0.39 -3.6
837,273 - CA265_RS03475 0.42 -1.9
837,292 - CA265_RS03475 0.44 -1.1
837,314 - CA265_RS03475 0.45 +0.8
837,370 + CA265_RS03475 0.49 -1.6
837,371 - CA265_RS03475 0.49 -0.9
837,423 + CA265_RS03475 0.53 -2.3
837,580 - CA265_RS03475 0.64 -0.3
837,619 + CA265_RS03475 0.67 -1.3
837,629 - CA265_RS03475 0.68 -1.5
837,693 + CA265_RS03475 0.72 -1.9
837,693 + CA265_RS03475 0.72 -0.7
837,698 - CA265_RS03475 0.72 -2.3
837,731 + CA265_RS03475 0.75 -1.4
837,731 + CA265_RS03475 0.75 +0.0
837,731 + CA265_RS03475 0.75 -1.8
837,731 + CA265_RS03475 0.75 -2.9
837,732 - CA265_RS03475 0.75 -2.5
837,732 - CA265_RS03475 0.75 -1.4
837,844 - CA265_RS03475 0.83 -1.7
837,848 - CA265_RS03475 0.83 -1.8
837,933 + CA265_RS03475 0.89 -2.3
837,952 + -3.5
837,952 + -3.1
837,968 + -0.2
838,064 + -1.0
838,089 - +0.5
838,092 - -2.4
838,092 - -0.5
838,127 - -1.5
838,190 - -1.4
838,192 + -0.2
838,200 - -0.9
838,268 - -0.2
838,270 + -2.8
838,271 - -0.5
838,276 + -1.9
838,277 - +0.5
838,279 + +0.1
838,415 + -0.7
838,487 - -0.1
838,652 + +0.5
838,662 - -3.2
838,674 - -0.4
838,703 + +0.6
838,704 - -1.8
838,704 - -0.7
838,803 + CA265_RS03480 0.10 -0.4
838,858 - CA265_RS03480 0.14 -0.7
838,902 - CA265_RS03480 0.18 -0.5
838,982 + CA265_RS03480 0.23 +0.5
838,991 + CA265_RS03480 0.24 +1.9
839,075 + CA265_RS03480 0.30 -0.4

Or see this region's nucleotide sequence