Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01875 and CA265_RS01880 are separated by 5 nucleotides CA265_RS01880 and CA265_RS01885 are separated by 289 nucleotides
CA265_RS01875: CA265_RS01875 - hypothetical protein, at 468,592 to 469,029
_RS01875
CA265_RS01880: CA265_RS01880 - phosphoglycerate kinase, at 469,035 to 470,228
_RS01880
CA265_RS01885: CA265_RS01885 - hypothetical protein, at 470,518 to 471,492
_RS01885
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.117 kb on + strand at 468.194 kb on + strand at 468.286 kb on + strand at 468.286 kb on + strand at 468.287 kb on - strand at 468.288 kb on + strand at 468.288 kb on + strand at 468.289 kb on - strand at 468.289 kb on - strand at 468.289 kb on - strand at 468.362 kb on + strand at 468.534 kb on - strand at 468.537 kb on - strand at 468.578 kb on - strand at 468.578 kb on - strand at 468.620 kb on + strand at 468.620 kb on + strand at 468.719 kb on + strand, within CA265_RS01875 at 468.810 kb on + strand, within CA265_RS01875 at 468.810 kb on + strand, within CA265_RS01875 at 468.885 kb on + strand, within CA265_RS01875 at 468.906 kb on + strand, within CA265_RS01875 at 468.975 kb on + strand, within CA265_RS01875 at 470.294 kb on + strand at 470.307 kb on + strand at 470.308 kb on - strand at 470.353 kb on - strand at 470.358 kb on + strand at 470.371 kb on + strand at 470.372 kb on - strand at 470.373 kb on + strand at 470.373 kb on + strand at 470.374 kb on - strand at 470.381 kb on - strand at 470.426 kb on + strand at 470.433 kb on + strand at 470.434 kb on - strand at 470.502 kb on + strand at 470.503 kb on - strand at 470.517 kb on + strand at 470.599 kb on - strand at 470.599 kb on - strand at 470.661 kb on + strand, within CA265_RS01885 at 470.722 kb on - strand, within CA265_RS01885 at 470.732 kb on + strand, within CA265_RS01885 at 470.733 kb on - strand, within CA265_RS01885 at 470.737 kb on + strand, within CA265_RS01885 at 470.749 kb on - strand, within CA265_RS01885 at 470.781 kb on - strand, within CA265_RS01885 at 470.915 kb on - strand, within CA265_RS01885 at 470.917 kb on - strand, within CA265_RS01885 at 470.956 kb on - strand, within CA265_RS01885 at 470.956 kb on - strand, within CA265_RS01885 at 470.997 kb on + strand, within CA265_RS01885 at 471.136 kb on + strand, within CA265_RS01885 at 471.164 kb on - strand, within CA265_RS01885 at 471.168 kb on - strand, within CA265_RS01885 at 471.198 kb on + strand, within CA265_RS01885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 468,117 + -0.2 468,194 + +1.5 468,286 + -1.5 468,286 + +0.4 468,287 - +0.8 468,288 + -0.1 468,288 + -0.6 468,289 - +0.7 468,289 - +0.4 468,289 - +0.5 468,362 + -1.5 468,534 - -1.6 468,537 - -0.9 468,578 - +0.8 468,578 - +0.1 468,620 + -1.0 468,620 + +1.2 468,719 + CA265_RS01875 0.29 -0.0 468,810 + CA265_RS01875 0.50 -1.2 468,810 + CA265_RS01875 0.50 +0.3 468,885 + CA265_RS01875 0.67 -0.1 468,906 + CA265_RS01875 0.72 -0.1 468,975 + CA265_RS01875 0.87 +0.5 470,294 + +0.3 470,307 + +1.1 470,308 - -1.0 470,353 - +0.1 470,358 + -0.2 470,371 + -0.1 470,372 - -1.6 470,373 + -2.1 470,373 + -0.1 470,374 - -1.2 470,381 - -0.1 470,426 + +1.4 470,433 + +0.8 470,434 - +0.4 470,502 + -1.0 470,503 - -0.5 470,517 + -0.2 470,599 - +0.1 470,599 - -1.6 470,661 + CA265_RS01885 0.15 +0.6 470,722 - CA265_RS01885 0.21 +0.9 470,732 + CA265_RS01885 0.22 +2.7 470,733 - CA265_RS01885 0.22 +0.6 470,737 + CA265_RS01885 0.22 +0.9 470,749 - CA265_RS01885 0.24 +0.1 470,781 - CA265_RS01885 0.27 -0.4 470,915 - CA265_RS01885 0.41 -0.9 470,917 - CA265_RS01885 0.41 -0.1 470,956 - CA265_RS01885 0.45 -2.3 470,956 - CA265_RS01885 0.45 -0.5 470,997 + CA265_RS01885 0.49 -0.5 471,136 + CA265_RS01885 0.63 +0.1 471,164 - CA265_RS01885 0.66 +1.0 471,168 - CA265_RS01885 0.67 +0.4 471,198 + CA265_RS01885 0.70 +0.4
Or see this region's nucleotide sequence