Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01860

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS01855 and CA265_RS01860 are separated by 648 nucleotidesCA265_RS01860 and CA265_RS01865 are separated by 167 nucleotides CA265_RS01855: CA265_RS01855 - hypothetical protein, at 461,696 to 462,733 _RS01855 CA265_RS01860: CA265_RS01860 - type I glyceraldehyde-3-phosphate dehydrogenase, at 463,382 to 464,368 _RS01860 CA265_RS01865: CA265_RS01865 - paraquat-inducible protein A, at 464,536 to 465,861 _RS01865 Position (kb) 463 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 462.385 kb on + strand, within CA265_RS01855at 462.385 kb on + strand, within CA265_RS01855at 462.403 kb on + strand, within CA265_RS01855at 462.403 kb on + strand, within CA265_RS01855at 462.472 kb on - strand, within CA265_RS01855at 462.533 kb on - strand, within CA265_RS01855at 462.533 kb on - strand, within CA265_RS01855at 462.562 kb on - strand, within CA265_RS01855at 462.631 kb on - strandat 462.631 kb on - strandat 462.667 kb on + strandat 462.667 kb on + strandat 462.692 kb on - strandat 462.705 kb on + strandat 462.706 kb on - strandat 462.740 kb on - strandat 462.816 kb on - strandat 462.817 kb on + strandat 462.841 kb on - strandat 462.847 kb on - strandat 462.955 kb on - strandat 463.003 kb on - strandat 463.010 kb on - strandat 463.013 kb on + strandat 463.044 kb on + strandat 463.055 kb on + strandat 463.055 kb on + strandat 463.146 kb on + strandat 463.147 kb on - strandat 463.149 kb on - strandat 463.172 kb on - strandat 463.266 kb on - strandat 463.318 kb on - strandat 463.374 kb on + strandat 463.413 kb on + strandat 463.504 kb on - strand, within CA265_RS01860at 463.513 kb on - strand, within CA265_RS01860at 463.585 kb on + strand, within CA265_RS01860at 463.586 kb on - strand, within CA265_RS01860at 463.637 kb on - strand, within CA265_RS01860at 463.751 kb on - strand, within CA265_RS01860at 463.838 kb on - strand, within CA265_RS01860at 463.891 kb on + strand, within CA265_RS01860at 463.891 kb on + strand, within CA265_RS01860at 463.892 kb on - strand, within CA265_RS01860at 463.892 kb on - strand, within CA265_RS01860at 463.895 kb on - strand, within CA265_RS01860at 464.050 kb on - strand, within CA265_RS01860at 464.101 kb on + strand, within CA265_RS01860at 464.140 kb on + strand, within CA265_RS01860at 464.211 kb on + strand, within CA265_RS01860at 464.222 kb on - strand, within CA265_RS01860at 464.323 kb on + strandat 464.323 kb on + strandat 464.385 kb on + strandat 464.559 kb on + strandat 464.710 kb on - strand, within CA265_RS01865at 464.745 kb on + strand, within CA265_RS01865at 464.746 kb on - strand, within CA265_RS01865at 464.746 kb on - strand, within CA265_RS01865at 464.775 kb on - strand, within CA265_RS01865at 464.849 kb on + strand, within CA265_RS01865at 464.875 kb on - strand, within CA265_RS01865at 464.931 kb on - strand, within CA265_RS01865at 464.994 kb on + strand, within CA265_RS01865at 465.151 kb on - strand, within CA265_RS01865at 465.199 kb on + strand, within CA265_RS01865at 465.199 kb on + strand, within CA265_RS01865at 465.200 kb on - strand, within CA265_RS01865at 465.200 kb on - strand, within CA265_RS01865at 465.210 kb on + strand, within CA265_RS01865at 465.312 kb on + strand, within CA265_RS01865at 465.313 kb on - strand, within CA265_RS01865at 465.313 kb on - strand, within CA265_RS01865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
462,385 + CA265_RS01855 0.66 +0.2
462,385 + CA265_RS01855 0.66 -0.2
462,403 + CA265_RS01855 0.68 +1.3
462,403 + CA265_RS01855 0.68 +0.4
462,472 - CA265_RS01855 0.75 +0.9
462,533 - CA265_RS01855 0.81 +0.8
462,533 - CA265_RS01855 0.81 -1.3
462,562 - CA265_RS01855 0.83 -2.7
462,631 - +0.1
462,631 - -1.4
462,667 + -0.2
462,667 + -3.1
462,692 - +0.0
462,705 + +1.7
462,706 - +0.5
462,740 - -0.0
462,816 - -2.2
462,817 + +0.6
462,841 - -1.4
462,847 - -0.3
462,955 - -1.5
463,003 - -0.4
463,010 - -0.2
463,013 + +1.8
463,044 + +0.2
463,055 + -0.1
463,055 + +0.8
463,146 + +1.5
463,147 - +1.0
463,149 - +0.0
463,172 - -0.2
463,266 - +0.1
463,318 - -0.7
463,374 + -1.5
463,413 + -1.8
463,504 - CA265_RS01860 0.12 -2.0
463,513 - CA265_RS01860 0.13 -1.8
463,585 + CA265_RS01860 0.21 -1.1
463,586 - CA265_RS01860 0.21 -1.9
463,637 - CA265_RS01860 0.26 -1.1
463,751 - CA265_RS01860 0.37 -1.3
463,838 - CA265_RS01860 0.46 -1.2
463,891 + CA265_RS01860 0.52 -2.8
463,891 + CA265_RS01860 0.52 -2.8
463,892 - CA265_RS01860 0.52 -0.7
463,892 - CA265_RS01860 0.52 -1.8
463,895 - CA265_RS01860 0.52 -0.6
464,050 - CA265_RS01860 0.68 -2.5
464,101 + CA265_RS01860 0.73 -2.9
464,140 + CA265_RS01860 0.77 -1.0
464,211 + CA265_RS01860 0.84 -0.8
464,222 - CA265_RS01860 0.85 -1.3
464,323 + -3.0
464,323 + -1.6
464,385 + +2.0
464,559 + -2.3
464,710 - CA265_RS01865 0.13 -1.8
464,745 + CA265_RS01865 0.16 -0.0
464,746 - CA265_RS01865 0.16 -0.3
464,746 - CA265_RS01865 0.16 +0.4
464,775 - CA265_RS01865 0.18 +0.0
464,849 + CA265_RS01865 0.24 +1.2
464,875 - CA265_RS01865 0.26 +0.3
464,931 - CA265_RS01865 0.30 -0.8
464,994 + CA265_RS01865 0.35 -0.7
465,151 - CA265_RS01865 0.46 -3.3
465,199 + CA265_RS01865 0.50 +0.2
465,199 + CA265_RS01865 0.50 +1.7
465,200 - CA265_RS01865 0.50 -0.3
465,200 - CA265_RS01865 0.50 -2.5
465,210 + CA265_RS01865 0.51 +0.7
465,312 + CA265_RS01865 0.59 +0.3
465,313 - CA265_RS01865 0.59 -0.6
465,313 - CA265_RS01865 0.59 +1.0

Or see this region's nucleotide sequence