Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01520

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01515 and CA265_RS01520 are separated by 364 nucleotidesCA265_RS01520 and CA265_RS01525 are separated by 152 nucleotides CA265_RS01515: CA265_RS01515 - 1,4-beta-xylanase, at 387,402 to 388,448 _RS01515 CA265_RS01520: CA265_RS01520 - beta-galactosidase, at 388,813 to 390,663 _RS01520 CA265_RS01525: CA265_RS01525 - hypothetical protein, at 390,816 to 391,262 _RS01525 Position (kb) 388 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 387.895 kb on - strand, within CA265_RS01515at 387.895 kb on - strand, within CA265_RS01515at 387.907 kb on + strand, within CA265_RS01515at 387.907 kb on + strand, within CA265_RS01515at 387.982 kb on + strand, within CA265_RS01515at 388.116 kb on - strand, within CA265_RS01515at 388.126 kb on - strand, within CA265_RS01515at 388.131 kb on - strand, within CA265_RS01515at 388.134 kb on + strand, within CA265_RS01515at 388.135 kb on - strand, within CA265_RS01515at 388.209 kb on + strand, within CA265_RS01515at 388.314 kb on - strand, within CA265_RS01515at 388.320 kb on + strand, within CA265_RS01515at 388.320 kb on + strand, within CA265_RS01515at 388.321 kb on - strand, within CA265_RS01515at 388.540 kb on - strandat 388.675 kb on + strandat 388.675 kb on + strandat 388.676 kb on - strandat 388.697 kb on + strandat 388.793 kb on + strandat 388.837 kb on - strandat 388.935 kb on + strandat 388.936 kb on - strandat 388.989 kb on + strandat 389.087 kb on + strand, within CA265_RS01520at 389.124 kb on + strand, within CA265_RS01520at 389.157 kb on + strand, within CA265_RS01520at 389.241 kb on + strand, within CA265_RS01520at 389.241 kb on + strand, within CA265_RS01520at 389.254 kb on - strand, within CA265_RS01520at 389.254 kb on - strand, within CA265_RS01520at 389.290 kb on - strand, within CA265_RS01520at 389.334 kb on - strand, within CA265_RS01520at 389.673 kb on - strand, within CA265_RS01520at 389.706 kb on + strand, within CA265_RS01520at 389.714 kb on + strand, within CA265_RS01520at 389.775 kb on + strand, within CA265_RS01520at 389.785 kb on - strand, within CA265_RS01520at 389.815 kb on + strand, within CA265_RS01520at 389.917 kb on - strand, within CA265_RS01520at 389.917 kb on - strand, within CA265_RS01520at 389.919 kb on + strand, within CA265_RS01520at 389.937 kb on + strand, within CA265_RS01520at 389.942 kb on + strand, within CA265_RS01520at 390.097 kb on + strand, within CA265_RS01520at 390.242 kb on + strand, within CA265_RS01520at 390.301 kb on + strand, within CA265_RS01520at 390.302 kb on - strand, within CA265_RS01520at 390.331 kb on + strand, within CA265_RS01520at 390.332 kb on - strand, within CA265_RS01520at 390.466 kb on + strand, within CA265_RS01520at 390.467 kb on - strand, within CA265_RS01520at 390.574 kb on + strandat 390.574 kb on + strandat 390.574 kb on + strandat 390.575 kb on - strandat 390.621 kb on - strandat 390.639 kb on + strandat 390.642 kb on + strandat 390.672 kb on - strandat 390.730 kb on + strandat 390.730 kb on + strandat 390.732 kb on + strandat 390.740 kb on - strandat 390.740 kb on - strandat 390.803 kb on - strandat 391.010 kb on - strand, within CA265_RS01525at 391.023 kb on - strand, within CA265_RS01525at 391.078 kb on - strand, within CA265_RS01525at 391.085 kb on + strand, within CA265_RS01525at 391.186 kb on + strand, within CA265_RS01525at 391.187 kb on - strand, within CA265_RS01525at 391.212 kb on + strand, within CA265_RS01525at 391.236 kb on - strandat 391.236 kb on - strandat 391.238 kb on + strandat 391.243 kb on - strandat 391.267 kb on + strandat 391.283 kb on - strandat 391.329 kb on - strandat 391.329 kb on - strandat 391.367 kb on - strandat 391.408 kb on - strandat 391.408 kb on - strandat 391.446 kb on + strandat 391.526 kb on - strandat 391.531 kb on + strandat 391.531 kb on + strandat 391.531 kb on + strandat 391.531 kb on + strandat 391.532 kb on - strandat 391.532 kb on - strandat 391.547 kb on - strandat 391.557 kb on - strandat 391.564 kb on + strandat 391.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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387,895 - CA265_RS01515 0.47 -2.3
387,895 - CA265_RS01515 0.47 +0.9
387,907 + CA265_RS01515 0.48 +1.0
387,907 + CA265_RS01515 0.48 -0.9
387,982 + CA265_RS01515 0.55 -0.6
388,116 - CA265_RS01515 0.68 -0.4
388,126 - CA265_RS01515 0.69 +0.4
388,131 - CA265_RS01515 0.70 -0.4
388,134 + CA265_RS01515 0.70 -1.3
388,135 - CA265_RS01515 0.70 -0.1
388,209 + CA265_RS01515 0.77 -0.8
388,314 - CA265_RS01515 0.87 -0.3
388,320 + CA265_RS01515 0.88 -0.4
388,320 + CA265_RS01515 0.88 -0.5
388,321 - CA265_RS01515 0.88 +0.8
388,540 - -0.3
388,675 + -0.3
388,675 + +0.2
388,676 - +0.3
388,697 + -0.8
388,793 + -0.7
388,837 - +1.0
388,935 + +0.4
388,936 - -0.8
388,989 + +0.1
389,087 + CA265_RS01520 0.15 -1.1
389,124 + CA265_RS01520 0.17 +0.1
389,157 + CA265_RS01520 0.19 -1.9
389,241 + CA265_RS01520 0.23 -0.6
389,241 + CA265_RS01520 0.23 +0.3
389,254 - CA265_RS01520 0.24 -0.4
389,254 - CA265_RS01520 0.24 -1.1
389,290 - CA265_RS01520 0.26 +0.9
389,334 - CA265_RS01520 0.28 +1.1
389,673 - CA265_RS01520 0.46 +0.2
389,706 + CA265_RS01520 0.48 -0.5
389,714 + CA265_RS01520 0.49 -0.1
389,775 + CA265_RS01520 0.52 -1.4
389,785 - CA265_RS01520 0.53 -0.0
389,815 + CA265_RS01520 0.54 -0.4
389,917 - CA265_RS01520 0.60 +1.0
389,917 - CA265_RS01520 0.60 +0.2
389,919 + CA265_RS01520 0.60 -0.2
389,937 + CA265_RS01520 0.61 -1.1
389,942 + CA265_RS01520 0.61 -0.6
390,097 + CA265_RS01520 0.69 -0.2
390,242 + CA265_RS01520 0.77 -0.0
390,301 + CA265_RS01520 0.80 +2.4
390,302 - CA265_RS01520 0.80 -0.4
390,331 + CA265_RS01520 0.82 +0.6
390,332 - CA265_RS01520 0.82 -1.6
390,466 + CA265_RS01520 0.89 -1.5
390,467 - CA265_RS01520 0.89 -1.6
390,574 + +0.4
390,574 + +2.4
390,574 + -0.8
390,575 - +1.5
390,621 - +0.3
390,639 + +0.4
390,642 + +0.6
390,672 - +0.1
390,730 + -0.0
390,730 + +1.1
390,732 + +2.3
390,740 - -0.6
390,740 - -1.4
390,803 - -1.7
391,010 - CA265_RS01525 0.43 -1.8
391,023 - CA265_RS01525 0.46 +0.5
391,078 - CA265_RS01525 0.59 +1.2
391,085 + CA265_RS01525 0.60 -1.0
391,186 + CA265_RS01525 0.83 -1.1
391,187 - CA265_RS01525 0.83 +0.1
391,212 + CA265_RS01525 0.89 -0.9
391,236 - +0.0
391,236 - -0.0
391,238 + +0.0
391,243 - -0.2
391,267 + +0.1
391,283 - -0.1
391,329 - +1.0
391,329 - -0.6
391,367 - +1.0
391,408 - -1.3
391,408 - +0.3
391,446 + -0.9
391,526 - -1.7
391,531 + +1.7
391,531 + +0.8
391,531 + +0.4
391,531 + +1.0
391,532 - +0.3
391,532 - +0.1
391,547 - +0.1
391,557 - +0.4
391,564 + +0.6
391,598 - +0.5

Or see this region's nucleotide sequence