Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01080 and CA265_RS01085 are separated by 59 nucleotides CA265_RS01085 and CA265_RS01090 are separated by 12 nucleotides CA265_RS01090 and CA265_RS01095 are separated by 5 nucleotides
CA265_RS01080: CA265_RS01080 - 6-phosphogluconate dehydrogenase, at 274,885 to 275,742
_RS01080
CA265_RS01085: CA265_RS01085 - hypothetical protein, at 275,802 to 276,203
_RS01085
CA265_RS01090: CA265_RS01090 - permease, at 276,216 to 277,049
_RS01090
CA265_RS01095: CA265_RS01095 - transcriptional regulator, at 277,055 to 277,705
_RS01095
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 274.822 kb on + strand at 274.873 kb on + strand at 274.952 kb on + strand at 274.953 kb on - strand at 274.978 kb on + strand, within CA265_RS01080 at 275.072 kb on + strand, within CA265_RS01080 at 275.073 kb on - strand, within CA265_RS01080 at 275.169 kb on + strand, within CA265_RS01080 at 275.217 kb on + strand, within CA265_RS01080 at 275.265 kb on - strand, within CA265_RS01080 at 275.292 kb on + strand, within CA265_RS01080 at 275.295 kb on + strand, within CA265_RS01080 at 275.296 kb on - strand, within CA265_RS01080 at 275.323 kb on - strand, within CA265_RS01080 at 275.330 kb on + strand, within CA265_RS01080 at 275.429 kb on + strand, within CA265_RS01080 at 275.432 kb on - strand, within CA265_RS01080 at 275.573 kb on - strand, within CA265_RS01080 at 275.575 kb on - strand, within CA265_RS01080 at 275.598 kb on + strand, within CA265_RS01080 at 275.599 kb on - strand, within CA265_RS01080 at 275.603 kb on + strand, within CA265_RS01080 at 275.604 kb on - strand, within CA265_RS01080 at 275.668 kb on - strand at 275.722 kb on - strand at 275.832 kb on + strand at 275.837 kb on + strand at 275.848 kb on - strand, within CA265_RS01085 at 275.853 kb on + strand, within CA265_RS01085 at 275.853 kb on + strand, within CA265_RS01085 at 275.854 kb on - strand, within CA265_RS01085 at 275.869 kb on + strand, within CA265_RS01085 at 275.870 kb on - strand, within CA265_RS01085 at 275.871 kb on + strand, within CA265_RS01085 at 275.871 kb on + strand, within CA265_RS01085 at 275.871 kb on + strand, within CA265_RS01085 at 275.876 kb on + strand, within CA265_RS01085 at 275.876 kb on + strand, within CA265_RS01085 at 275.910 kb on + strand, within CA265_RS01085 at 276.016 kb on + strand, within CA265_RS01085 at 276.017 kb on - strand, within CA265_RS01085 at 276.075 kb on + strand, within CA265_RS01085 at 276.077 kb on - strand, within CA265_RS01085 at 276.087 kb on + strand, within CA265_RS01085 at 276.123 kb on + strand, within CA265_RS01085 at 276.123 kb on + strand, within CA265_RS01085 at 276.275 kb on + strand at 276.386 kb on + strand, within CA265_RS01090 at 276.386 kb on + strand, within CA265_RS01090 at 276.387 kb on - strand, within CA265_RS01090 at 276.387 kb on - strand, within CA265_RS01090 at 276.387 kb on - strand, within CA265_RS01090 at 276.388 kb on + strand, within CA265_RS01090 at 276.408 kb on + strand, within CA265_RS01090 at 276.409 kb on - strand at 276.409 kb on - strand, within CA265_RS01090 at 276.409 kb on - strand, within CA265_RS01090 at 276.409 kb on - strand, within CA265_RS01090 at 276.409 kb on - strand, within CA265_RS01090 at 276.459 kb on - strand, within CA265_RS01090 at 276.462 kb on + strand, within CA265_RS01090 at 276.467 kb on + strand, within CA265_RS01090 at 276.467 kb on + strand, within CA265_RS01090 at 276.501 kb on + strand, within CA265_RS01090 at 276.543 kb on + strand, within CA265_RS01090 at 276.594 kb on - strand, within CA265_RS01090 at 276.720 kb on + strand, within CA265_RS01090 at 276.720 kb on + strand, within CA265_RS01090 at 276.721 kb on - strand, within CA265_RS01090 at 276.747 kb on - strand, within CA265_RS01090 at 276.753 kb on - strand, within CA265_RS01090 at 276.760 kb on + strand, within CA265_RS01090 at 276.761 kb on - strand, within CA265_RS01090 at 276.761 kb on - strand, within CA265_RS01090 at 276.771 kb on + strand, within CA265_RS01090 at 276.772 kb on - strand, within CA265_RS01090 at 276.782 kb on + strand, within CA265_RS01090 at 276.828 kb on + strand, within CA265_RS01090 at 276.829 kb on - strand, within CA265_RS01090 at 276.895 kb on - strand, within CA265_RS01090 at 276.946 kb on - strand, within CA265_RS01090 at 276.960 kb on + strand, within CA265_RS01090 at 277.032 kb on - strand at 277.053 kb on - strand at 277.053 kb on - strand at 277.056 kb on + strand at 277.063 kb on + strand at 277.067 kb on - strand at 277.073 kb on + strand at 277.128 kb on + strand, within CA265_RS01095 at 277.128 kb on + strand, within CA265_RS01095 at 277.129 kb on - strand, within CA265_RS01095 at 277.129 kb on - strand, within CA265_RS01095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 274,822 + -3.3 274,873 + +1.5 274,952 + -1.8 274,953 - +0.5 274,978 + CA265_RS01080 0.11 -1.4 275,072 + CA265_RS01080 0.22 +1.2 275,073 - CA265_RS01080 0.22 -0.1 275,169 + CA265_RS01080 0.33 -0.1 275,217 + CA265_RS01080 0.39 -0.2 275,265 - CA265_RS01080 0.44 -0.1 275,292 + CA265_RS01080 0.47 +0.3 275,295 + CA265_RS01080 0.48 +1.2 275,296 - CA265_RS01080 0.48 -0.4 275,323 - CA265_RS01080 0.51 -1.4 275,330 + CA265_RS01080 0.52 +0.4 275,429 + CA265_RS01080 0.63 +0.3 275,432 - CA265_RS01080 0.64 -0.3 275,573 - CA265_RS01080 0.80 +0.4 275,575 - CA265_RS01080 0.80 -0.6 275,598 + CA265_RS01080 0.83 -1.8 275,599 - CA265_RS01080 0.83 -0.0 275,603 + CA265_RS01080 0.84 +2.0 275,604 - CA265_RS01080 0.84 +0.3 275,668 - +1.3 275,722 - +0.5 275,832 + +0.3 275,837 + +2.9 275,848 - CA265_RS01085 0.11 -0.9 275,853 + CA265_RS01085 0.13 +1.8 275,853 + CA265_RS01085 0.13 +0.8 275,854 - CA265_RS01085 0.13 +1.1 275,869 + CA265_RS01085 0.17 +1.2 275,870 - CA265_RS01085 0.17 +1.0 275,871 + CA265_RS01085 0.17 +1.3 275,871 + CA265_RS01085 0.17 -0.0 275,871 + CA265_RS01085 0.17 +1.0 275,876 + CA265_RS01085 0.18 +0.3 275,876 + CA265_RS01085 0.18 +1.9 275,910 + CA265_RS01085 0.27 -1.3 276,016 + CA265_RS01085 0.53 +1.3 276,017 - CA265_RS01085 0.53 +2.2 276,075 + CA265_RS01085 0.68 +1.2 276,077 - CA265_RS01085 0.68 +1.2 276,087 + CA265_RS01085 0.71 +0.5 276,123 + CA265_RS01085 0.80 +1.2 276,123 + CA265_RS01085 0.80 +0.6 276,275 + +0.0 276,386 + CA265_RS01090 0.20 +0.8 276,386 + CA265_RS01090 0.20 +1.0 276,387 - CA265_RS01090 0.21 +0.9 276,387 - CA265_RS01090 0.21 +0.8 276,387 - CA265_RS01090 0.21 +0.1 276,388 + CA265_RS01090 0.21 +0.3 276,408 + CA265_RS01090 0.23 +0.7 276,409 - +1.8 276,409 - CA265_RS01090 0.23 +0.8 276,409 - CA265_RS01090 0.23 +1.4 276,409 - CA265_RS01090 0.23 +0.8 276,409 - CA265_RS01090 0.23 +1.5 276,459 - CA265_RS01090 0.29 +0.2 276,462 + CA265_RS01090 0.29 +1.1 276,467 + CA265_RS01090 0.30 +0.4 276,467 + CA265_RS01090 0.30 +0.3 276,501 + CA265_RS01090 0.34 +1.5 276,543 + CA265_RS01090 0.39 +0.8 276,594 - CA265_RS01090 0.45 +0.8 276,720 + CA265_RS01090 0.60 +1.2 276,720 + CA265_RS01090 0.60 +0.9 276,721 - CA265_RS01090 0.61 +0.6 276,747 - CA265_RS01090 0.64 +0.0 276,753 - CA265_RS01090 0.64 +0.8 276,760 + CA265_RS01090 0.65 +1.5 276,761 - CA265_RS01090 0.65 +1.0 276,761 - CA265_RS01090 0.65 +0.6 276,771 + CA265_RS01090 0.67 +1.5 276,772 - CA265_RS01090 0.67 -1.5 276,782 + CA265_RS01090 0.68 +0.0 276,828 + CA265_RS01090 0.73 +0.2 276,829 - CA265_RS01090 0.74 +0.8 276,895 - CA265_RS01090 0.81 +0.8 276,946 - CA265_RS01090 0.88 +0.9 276,960 + CA265_RS01090 0.89 -0.8 277,032 - +1.4 277,053 - -0.4 277,053 - -1.9 277,056 + +0.9 277,063 + +0.7 277,067 - +4.3 277,073 + -0.4 277,128 + CA265_RS01095 0.11 +0.1 277,128 + CA265_RS01095 0.11 +0.7 277,129 - CA265_RS01095 0.11 +2.8 277,129 - CA265_RS01095 0.11 +3.1
Or see this region's nucleotide sequence