Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00670 and CA265_RS00675 are separated by 18 nucleotides CA265_RS00675 and CA265_RS00680 are separated by 25 nucleotides CA265_RS00680 and CA265_RS00685 are separated by 371 nucleotides CA265_RS00685 and CA265_RS00690 are separated by 65 nucleotides
CA265_RS00670: CA265_RS00670 - metallophosphoesterase, at 152,886 to 153,728
_RS00670
CA265_RS00675: CA265_RS00675 - hypothetical protein, at 153,747 to 154,586
_RS00675
CA265_RS00680: CA265_RS00680 - hypothetical protein, at 154,612 to 157,053
_RS00680
CA265_RS00685: CA265_RS00685 - peptide-methionine (S)-S-oxide reductase, at 157,425 to 157,913
_RS00685
CA265_RS00690: CA265_RS00690 - hypothetical protein, at 157,979 to 158,374
_RS00690
Position (kb) 154
155
156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.627 kb on + strand, within CA265_RS00670 at 153.678 kb on + strand at 153.743 kb on + strand at 153.758 kb on - strand at 153.782 kb on + strand at 153.927 kb on + strand, within CA265_RS00675 at 154.112 kb on - strand, within CA265_RS00675 at 154.127 kb on - strand, within CA265_RS00675 at 154.144 kb on + strand, within CA265_RS00675 at 154.144 kb on + strand, within CA265_RS00675 at 154.187 kb on + strand, within CA265_RS00675 at 154.311 kb on - strand, within CA265_RS00675 at 154.320 kb on + strand, within CA265_RS00675 at 154.321 kb on - strand, within CA265_RS00675 at 154.339 kb on + strand, within CA265_RS00675 at 154.339 kb on + strand, within CA265_RS00675 at 154.340 kb on - strand, within CA265_RS00675 at 154.352 kb on - strand, within CA265_RS00675 at 154.397 kb on - strand, within CA265_RS00675 at 154.547 kb on + strand at 154.548 kb on - strand at 154.628 kb on + strand at 154.631 kb on + strand at 154.802 kb on - strand at 154.830 kb on + strand at 154.918 kb on - strand, within CA265_RS00680 at 154.920 kb on + strand, within CA265_RS00680 at 154.920 kb on + strand, within CA265_RS00680 at 154.940 kb on - strand, within CA265_RS00680 at 154.960 kb on - strand, within CA265_RS00680 at 154.980 kb on + strand, within CA265_RS00680 at 155.090 kb on + strand, within CA265_RS00680 at 155.090 kb on + strand, within CA265_RS00680 at 155.091 kb on - strand, within CA265_RS00680 at 155.093 kb on - strand, within CA265_RS00680 at 155.093 kb on - strand, within CA265_RS00680 at 155.113 kb on - strand, within CA265_RS00680 at 155.123 kb on - strand, within CA265_RS00680 at 155.218 kb on + strand, within CA265_RS00680 at 155.315 kb on + strand, within CA265_RS00680 at 155.316 kb on - strand, within CA265_RS00680 at 155.316 kb on - strand, within CA265_RS00680 at 155.326 kb on - strand, within CA265_RS00680 at 155.398 kb on - strand, within CA265_RS00680 at 155.419 kb on - strand, within CA265_RS00680 at 155.428 kb on + strand, within CA265_RS00680 at 155.471 kb on + strand, within CA265_RS00680 at 155.495 kb on - strand, within CA265_RS00680 at 155.514 kb on + strand, within CA265_RS00680 at 155.538 kb on - strand, within CA265_RS00680 at 155.694 kb on + strand, within CA265_RS00680 at 155.695 kb on - strand, within CA265_RS00680 at 155.763 kb on + strand, within CA265_RS00680 at 155.808 kb on - strand, within CA265_RS00680 at 155.810 kb on - strand, within CA265_RS00680 at 155.811 kb on + strand, within CA265_RS00680 at 155.841 kb on + strand, within CA265_RS00680 at 155.935 kb on - strand, within CA265_RS00680 at 156.027 kb on + strand, within CA265_RS00680 at 156.058 kb on + strand, within CA265_RS00680 at 156.095 kb on + strand, within CA265_RS00680 at 156.144 kb on - strand, within CA265_RS00680 at 156.144 kb on - strand, within CA265_RS00680 at 156.170 kb on - strand, within CA265_RS00680 at 156.312 kb on + strand, within CA265_RS00680 at 156.313 kb on - strand, within CA265_RS00680 at 156.333 kb on + strand, within CA265_RS00680 at 156.333 kb on + strand, within CA265_RS00680 at 156.334 kb on - strand, within CA265_RS00680 at 156.462 kb on + strand, within CA265_RS00680 at 156.462 kb on + strand, within CA265_RS00680 at 156.493 kb on - strand, within CA265_RS00680 at 156.670 kb on + strand, within CA265_RS00680 at 156.703 kb on + strand, within CA265_RS00680 at 156.704 kb on - strand, within CA265_RS00680 at 156.708 kb on + strand, within CA265_RS00680 at 156.708 kb on + strand, within CA265_RS00680 at 156.744 kb on - strand, within CA265_RS00680 at 156.788 kb on + strand, within CA265_RS00680 at 156.788 kb on + strand, within CA265_RS00680 at 156.791 kb on - strand, within CA265_RS00680 at 156.791 kb on - strand, within CA265_RS00680 at 156.826 kb on + strand at 156.827 kb on - strand at 157.068 kb on + strand at 157.174 kb on + strand at 157.174 kb on + strand at 157.201 kb on + strand at 157.202 kb on - strand at 157.248 kb on - strand at 157.379 kb on + strand at 157.410 kb on + strand at 157.460 kb on + strand at 157.460 kb on + strand at 157.461 kb on - strand at 157.461 kb on - strand at 157.620 kb on - strand, within CA265_RS00685 at 157.625 kb on - strand, within CA265_RS00685 at 157.649 kb on + strand, within CA265_RS00685 at 157.650 kb on - strand, within CA265_RS00685 at 157.654 kb on - strand, within CA265_RS00685 at 157.705 kb on + strand, within CA265_RS00685 at 157.706 kb on - strand, within CA265_RS00685 at 157.706 kb on - strand, within CA265_RS00685 at 157.728 kb on + strand, within CA265_RS00685 at 157.817 kb on - strand, within CA265_RS00685 at 157.914 kb on - strand at 157.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 153,627 + CA265_RS00670 0.88 -0.3 153,678 + -1.1 153,743 + +0.0 153,758 - +0.4 153,782 + +0.1 153,927 + CA265_RS00675 0.21 -0.7 154,112 - CA265_RS00675 0.43 +0.8 154,127 - CA265_RS00675 0.45 +0.9 154,144 + CA265_RS00675 0.47 -0.3 154,144 + CA265_RS00675 0.47 -1.9 154,187 + CA265_RS00675 0.52 -2.6 154,311 - CA265_RS00675 0.67 +0.1 154,320 + CA265_RS00675 0.68 -1.1 154,321 - CA265_RS00675 0.68 +1.2 154,339 + CA265_RS00675 0.70 -1.6 154,339 + CA265_RS00675 0.70 +0.5 154,340 - CA265_RS00675 0.71 +0.2 154,352 - CA265_RS00675 0.72 -0.7 154,397 - CA265_RS00675 0.77 -0.9 154,547 + +0.3 154,548 - -3.1 154,628 + +1.6 154,631 + -2.8 154,802 - +0.2 154,830 + -1.1 154,918 - CA265_RS00680 0.13 +0.1 154,920 + CA265_RS00680 0.13 -0.3 154,920 + CA265_RS00680 0.13 +0.4 154,940 - CA265_RS00680 0.13 +0.1 154,960 - CA265_RS00680 0.14 -0.6 154,980 + CA265_RS00680 0.15 +0.5 155,090 + CA265_RS00680 0.20 -2.1 155,090 + CA265_RS00680 0.20 +1.0 155,091 - CA265_RS00680 0.20 -0.5 155,093 - CA265_RS00680 0.20 -0.5 155,093 - CA265_RS00680 0.20 +1.2 155,113 - CA265_RS00680 0.21 -0.7 155,123 - CA265_RS00680 0.21 -0.5 155,218 + CA265_RS00680 0.25 -1.6 155,315 + CA265_RS00680 0.29 -0.5 155,316 - CA265_RS00680 0.29 -0.8 155,316 - CA265_RS00680 0.29 +0.7 155,326 - CA265_RS00680 0.29 -0.6 155,398 - CA265_RS00680 0.32 -1.8 155,419 - CA265_RS00680 0.33 -0.9 155,428 + CA265_RS00680 0.33 -1.1 155,471 + CA265_RS00680 0.35 -0.4 155,495 - CA265_RS00680 0.36 -1.2 155,514 + CA265_RS00680 0.37 +0.5 155,538 - CA265_RS00680 0.38 +0.1 155,694 + CA265_RS00680 0.44 +0.4 155,695 - CA265_RS00680 0.44 -0.0 155,763 + CA265_RS00680 0.47 +0.0 155,808 - CA265_RS00680 0.49 -0.4 155,810 - CA265_RS00680 0.49 -2.2 155,811 + CA265_RS00680 0.49 -2.4 155,841 + CA265_RS00680 0.50 -2.0 155,935 - CA265_RS00680 0.54 -1.9 156,027 + CA265_RS00680 0.58 +0.4 156,058 + CA265_RS00680 0.59 -0.1 156,095 + CA265_RS00680 0.61 -1.2 156,144 - CA265_RS00680 0.63 -0.5 156,144 - CA265_RS00680 0.63 -1.2 156,170 - CA265_RS00680 0.64 -1.1 156,312 + CA265_RS00680 0.70 -0.5 156,313 - CA265_RS00680 0.70 -0.5 156,333 + CA265_RS00680 0.70 -1.5 156,333 + CA265_RS00680 0.70 -0.7 156,334 - CA265_RS00680 0.71 +1.8 156,462 + CA265_RS00680 0.76 +0.3 156,462 + CA265_RS00680 0.76 -1.6 156,493 - CA265_RS00680 0.77 +0.7 156,670 + CA265_RS00680 0.84 -0.2 156,703 + CA265_RS00680 0.86 +2.3 156,704 - CA265_RS00680 0.86 +0.1 156,708 + CA265_RS00680 0.86 +0.5 156,708 + CA265_RS00680 0.86 -0.8 156,744 - CA265_RS00680 0.87 -0.2 156,788 + CA265_RS00680 0.89 -1.9 156,788 + CA265_RS00680 0.89 -0.1 156,791 - CA265_RS00680 0.89 +0.3 156,791 - CA265_RS00680 0.89 -1.1 156,826 + -0.0 156,827 - +0.1 157,068 + +1.8 157,174 + -0.2 157,174 + +0.4 157,201 + +0.7 157,202 - +2.6 157,248 - -0.4 157,379 + -0.1 157,410 + +1.8 157,460 + +1.8 157,460 + +0.8 157,461 - +0.3 157,461 - +0.2 157,620 - CA265_RS00685 0.40 +0.5 157,625 - CA265_RS00685 0.41 +0.1 157,649 + CA265_RS00685 0.46 -0.4 157,650 - CA265_RS00685 0.46 +0.0 157,654 - CA265_RS00685 0.47 -2.5 157,705 + CA265_RS00685 0.57 -0.7 157,706 - CA265_RS00685 0.57 -0.8 157,706 - CA265_RS00685 0.57 -0.0 157,728 + CA265_RS00685 0.62 -0.9 157,817 - CA265_RS00685 0.80 +1.6 157,914 - +0.7 157,915 + +0.4
Or see this region's nucleotide sequence