Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00645 and CA265_RS00650 are separated by 344 nucleotides CA265_RS00650 and CA265_RS00655 are separated by 88 nucleotides CA265_RS00655 and CA265_RS00660 are separated by 258 nucleotides
CA265_RS00645: CA265_RS00645 - MFS transporter, at 146,261 to 147,445
_RS00645
CA265_RS00650: CA265_RS00650 - hypothetical protein, at 147,790 to 147,984
_RS00650
CA265_RS00655: CA265_RS00655 - RNA polymerase subunit sigma-24, at 148,073 to 148,657
_RS00655
CA265_RS00660: CA265_RS00660 - uvrA paralog in Bacteroidetes <small>(from data)</small>, at 148,916 to 151,729
_RS00660
Position (kb) 147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 146.790 kb on + strand, within CA265_RS00645 at 146.912 kb on + strand, within CA265_RS00645 at 146.918 kb on + strand, within CA265_RS00645 at 146.931 kb on - strand, within CA265_RS00645 at 147.160 kb on + strand, within CA265_RS00645 at 147.257 kb on - strand, within CA265_RS00645 at 147.407 kb on + strand at 147.495 kb on + strand at 147.522 kb on + strand at 147.529 kb on - strand at 147.532 kb on + strand at 147.532 kb on + strand at 147.533 kb on - strand at 147.533 kb on - strand at 147.582 kb on - strand at 147.705 kb on + strand at 147.706 kb on - strand at 147.708 kb on + strand at 147.709 kb on - strand at 147.727 kb on - strand at 147.799 kb on - strand at 147.807 kb on - strand at 147.812 kb on - strand, within CA265_RS00650 at 147.864 kb on + strand, within CA265_RS00650 at 147.881 kb on + strand, within CA265_RS00650 at 147.893 kb on - strand, within CA265_RS00650 at 147.936 kb on + strand, within CA265_RS00650 at 147.970 kb on - strand at 148.008 kb on + strand at 148.017 kb on - strand at 148.023 kb on - strand at 148.146 kb on - strand, within CA265_RS00655 at 148.196 kb on + strand, within CA265_RS00655 at 148.206 kb on + strand, within CA265_RS00655 at 148.273 kb on + strand, within CA265_RS00655 at 148.297 kb on + strand, within CA265_RS00655 at 148.455 kb on + strand, within CA265_RS00655 at 148.477 kb on + strand, within CA265_RS00655 at 148.482 kb on - strand, within CA265_RS00655 at 148.522 kb on - strand, within CA265_RS00655 at 148.546 kb on + strand, within CA265_RS00655 at 148.548 kb on - strand, within CA265_RS00655 at 148.562 kb on - strand, within CA265_RS00655 at 148.567 kb on + strand, within CA265_RS00655 at 148.568 kb on - strand, within CA265_RS00655 at 148.577 kb on + strand, within CA265_RS00655 at 148.612 kb on + strand at 148.613 kb on - strand at 148.613 kb on - strand at 148.614 kb on + strand at 148.615 kb on - strand at 148.641 kb on + strand at 148.642 kb on - strand at 148.642 kb on - strand at 148.664 kb on - strand at 148.684 kb on + strand at 148.698 kb on + strand at 148.705 kb on + strand at 148.867 kb on + strand at 148.894 kb on + strand at 148.899 kb on + strand at 148.913 kb on + strand at 148.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 146,790 + CA265_RS00645 0.45 -0.7 146,912 + CA265_RS00645 0.55 +0.0 146,918 + CA265_RS00645 0.55 -0.2 146,931 - CA265_RS00645 0.57 -0.5 147,160 + CA265_RS00645 0.76 +0.1 147,257 - CA265_RS00645 0.84 -0.7 147,407 + -0.2 147,495 + -0.4 147,522 + +1.2 147,529 - +0.2 147,532 + -0.9 147,532 + -1.2 147,533 - +1.2 147,533 - -1.1 147,582 - -0.3 147,705 + -1.4 147,706 - +0.7 147,708 + -1.5 147,709 - -0.4 147,727 - -0.0 147,799 - -1.7 147,807 - -1.9 147,812 - CA265_RS00650 0.11 -3.3 147,864 + CA265_RS00650 0.38 -2.6 147,881 + CA265_RS00650 0.47 -1.7 147,893 - CA265_RS00650 0.53 -3.5 147,936 + CA265_RS00650 0.75 -0.9 147,970 - -1.7 148,008 + -4.0 148,017 - +1.1 148,023 - +0.2 148,146 - CA265_RS00655 0.12 -0.4 148,196 + CA265_RS00655 0.21 +0.2 148,206 + CA265_RS00655 0.23 +0.9 148,273 + CA265_RS00655 0.34 +0.1 148,297 + CA265_RS00655 0.38 +1.3 148,455 + CA265_RS00655 0.65 -0.3 148,477 + CA265_RS00655 0.69 +0.2 148,482 - CA265_RS00655 0.70 +0.0 148,522 - CA265_RS00655 0.77 -1.4 148,546 + CA265_RS00655 0.81 +0.8 148,548 - CA265_RS00655 0.81 +0.8 148,562 - CA265_RS00655 0.84 +2.1 148,567 + CA265_RS00655 0.84 -0.7 148,568 - CA265_RS00655 0.85 +1.2 148,577 + CA265_RS00655 0.86 -0.1 148,612 + +0.1 148,613 - +0.3 148,613 - +0.7 148,614 + +0.6 148,615 - -0.9 148,641 + +0.2 148,642 - +0.6 148,642 - -1.8 148,664 - -2.4 148,684 + -0.2 148,698 + -0.7 148,705 + -0.5 148,867 + +0.6 148,894 + +0.9 148,899 + -0.8 148,913 + -0.1 148,914 - -0.7
Or see this region's nucleotide sequence