Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00585 and CA265_RS00590 are separated by 74 nucleotides CA265_RS00590 and CA265_RS00595 are separated by 223 nucleotides CA265_RS00595 and CA265_RS00600 are separated by 114 nucleotides
CA265_RS00585: CA265_RS00585 - translocation/assembly module TamB, at 130,429 to 134,859
_RS00585
CA265_RS00590: CA265_RS00590 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 134,934 to 135,935
_RS00590
CA265_RS00595: CA265_RS00595 - hypothetical protein, at 136,159 to 136,356
_RS00595
CA265_RS00600: CA265_RS00600 - recombinase RecA, at 136,471 to 137,484
_RS00600
Position (kb) 134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 133.938 kb on + strand, within CA265_RS00585 at 133.963 kb on + strand, within CA265_RS00585 at 133.983 kb on + strand, within CA265_RS00585 at 133.984 kb on - strand, within CA265_RS00585 at 134.118 kb on + strand, within CA265_RS00585 at 134.118 kb on + strand, within CA265_RS00585 at 134.119 kb on - strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.127 kb on - strand, within CA265_RS00585 at 134.127 kb on - strand, within CA265_RS00585 at 134.169 kb on - strand, within CA265_RS00585 at 134.233 kb on + strand, within CA265_RS00585 at 134.373 kb on + strand, within CA265_RS00585 at 134.374 kb on - strand, within CA265_RS00585 at 134.418 kb on - strand at 134.442 kb on - strand at 134.463 kb on + strand at 134.474 kb on + strand at 134.475 kb on - strand at 134.475 kb on - strand at 134.497 kb on + strand at 134.508 kb on + strand at 134.523 kb on - strand at 134.528 kb on - strand at 134.553 kb on + strand at 134.623 kb on - strand at 134.641 kb on - strand at 134.702 kb on - strand at 134.734 kb on - strand at 134.767 kb on - strand at 134.783 kb on + strand at 134.783 kb on + strand at 134.783 kb on + strand at 134.784 kb on - strand at 134.864 kb on - strand at 135.934 kb on - strand at 136.148 kb on + strand at 136.148 kb on + strand at 136.158 kb on + strand at 136.158 kb on + strand at 136.158 kb on + strand at 136.159 kb on - strand at 136.308 kb on + strand, within CA265_RS00595 at 136.309 kb on - strand, within CA265_RS00595 at 136.310 kb on + strand, within CA265_RS00595 at 136.310 kb on + strand, within CA265_RS00595 at 136.310 kb on + strand, within CA265_RS00595 at 136.311 kb on - strand, within CA265_RS00595 at 136.384 kb on - strand at 136.402 kb on + strand at 136.403 kb on - strand at 136.427 kb on + strand at 136.433 kb on + strand at 136.450 kb on - strand at 136.454 kb on + strand at 136.498 kb on + strand at 136.575 kb on + strand, within CA265_RS00600 at 136.594 kb on - strand, within CA265_RS00600 at 136.632 kb on + strand, within CA265_RS00600 at 136.806 kb on + strand, within CA265_RS00600 at 136.810 kb on + strand, within CA265_RS00600 at 136.895 kb on - strand, within CA265_RS00600 at 136.911 kb on + strand, within CA265_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 133,938 + CA265_RS00585 0.79 +0.1 133,963 + CA265_RS00585 0.80 -2.2 133,983 + CA265_RS00585 0.80 -0.8 133,984 - CA265_RS00585 0.80 -1.6 134,118 + CA265_RS00585 0.83 -0.3 134,118 + CA265_RS00585 0.83 -1.1 134,119 - CA265_RS00585 0.83 -0.6 134,122 + CA265_RS00585 0.83 -0.9 134,122 + CA265_RS00585 0.83 -2.8 134,122 + CA265_RS00585 0.83 -0.1 134,127 - CA265_RS00585 0.83 -0.1 134,127 - CA265_RS00585 0.83 -2.2 134,169 - CA265_RS00585 0.84 -0.8 134,233 + CA265_RS00585 0.86 -0.4 134,373 + CA265_RS00585 0.89 -1.5 134,374 - CA265_RS00585 0.89 -1.2 134,418 - -0.4 134,442 - +0.2 134,463 + +0.6 134,474 + -0.0 134,475 - +0.1 134,475 - -0.1 134,497 + -1.1 134,508 + +0.3 134,523 - -1.5 134,528 - +1.9 134,553 + +0.1 134,623 - -0.8 134,641 - -0.7 134,702 - +1.5 134,734 - -0.6 134,767 - -0.5 134,783 + +0.3 134,783 + -1.7 134,783 + -1.2 134,784 - +0.5 134,864 - -0.4 135,934 - -1.7 136,148 + -0.2 136,148 + +0.7 136,158 + +0.4 136,158 + +0.9 136,158 + -0.7 136,159 - -0.5 136,308 + CA265_RS00595 0.75 -1.5 136,309 - CA265_RS00595 0.76 -2.1 136,310 + CA265_RS00595 0.76 +1.0 136,310 + CA265_RS00595 0.76 +1.0 136,310 + CA265_RS00595 0.76 +0.9 136,311 - CA265_RS00595 0.77 -0.2 136,384 - -0.2 136,402 + -0.1 136,403 - +1.6 136,427 + +0.5 136,433 + +0.0 136,450 - +0.0 136,454 + -0.5 136,498 + +0.4 136,575 + CA265_RS00600 0.10 +0.1 136,594 - CA265_RS00600 0.12 -2.3 136,632 + CA265_RS00600 0.16 +0.6 136,806 + CA265_RS00600 0.33 -0.4 136,810 + CA265_RS00600 0.33 +0.8 136,895 - CA265_RS00600 0.42 -0.8 136,911 + CA265_RS00600 0.43 -0.3
Or see this region's nucleotide sequence