Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00570 and CA265_RS00575 are separated by 30 nucleotides
CA265_RS00570: CA265_RS00570 - hypothetical protein, at 126,030 to 126,410
_RS00570
CA265_RS00575: CA265_RS00575 - permease, at 126,441 to 127,865
_RS00575
Position (kb)
126
127 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 125.058 kb on + strand at 125.059 kb on - strand at 125.079 kb on + strand at 125.080 kb on - strand at 125.082 kb on + strand at 125.240 kb on - strand at 125.241 kb on + strand at 125.242 kb on - strand at 125.342 kb on + strand at 125.349 kb on + strand at 125.350 kb on - strand at 125.351 kb on + strand at 125.351 kb on + strand at 125.352 kb on - strand at 125.360 kb on + strand at 125.360 kb on + strand at 125.360 kb on + strand at 125.362 kb on + strand at 125.362 kb on + strand at 125.376 kb on - strand at 125.466 kb on - strand at 125.502 kb on + strand at 125.544 kb on - strand at 125.580 kb on - strand at 125.585 kb on + strand at 125.586 kb on - strand at 125.586 kb on - strand at 125.639 kb on - strand at 125.673 kb on - strand at 125.903 kb on - strand at 125.962 kb on + strand at 126.023 kb on + strand at 126.026 kb on + strand at 126.056 kb on - strand at 126.085 kb on + strand, within CA265_RS00570 at 126.092 kb on + strand, within CA265_RS00570 at 126.164 kb on + strand, within CA265_RS00570 at 126.221 kb on + strand, within CA265_RS00570 at 126.221 kb on + strand, within CA265_RS00570 at 126.296 kb on - strand, within CA265_RS00570 at 126.329 kb on + strand, within CA265_RS00570 at 126.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 125,058 + +2.3 125,059 - -0.4 125,079 + +0.8 125,080 - +1.4 125,082 + +0.9 125,240 - +0.3 125,241 + +1.1 125,242 - -0.1 125,342 + +1.6 125,349 + +1.5 125,350 - +3.1 125,351 + +1.9 125,351 + +2.7 125,352 - -1.1 125,360 + +2.0 125,360 + +1.7 125,360 + +2.4 125,362 + +1.6 125,362 + +2.1 125,376 - -0.5 125,466 - +0.9 125,502 + +1.7 125,544 - +0.3 125,580 - -0.2 125,585 + +2.8 125,586 - -0.3 125,586 - -0.1 125,639 - -0.2 125,673 - -0.2 125,903 - +0.1 125,962 + +1.7 126,023 + -1.2 126,026 + -0.5 126,056 - -3.2 126,085 + CA265_RS00570 0.14 -1.6 126,092 + CA265_RS00570 0.16 -0.8 126,164 + CA265_RS00570 0.35 -0.6 126,221 + CA265_RS00570 0.50 -1.7 126,221 + CA265_RS00570 0.50 -3.2 126,296 - CA265_RS00570 0.70 -1.3 126,329 + CA265_RS00570 0.78 -2.2 126,408 + +0.6
Or see this region's nucleotide sequence