Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19645

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
2,190,201	+		BBR_RS19640	0.69	+1.2
2,190,579	-				+0.7
2,190,606	+				+0.9
2,190,621	+				+1.1
2,190,621	+				+1.0
2,190,621	+				+1.3
2,190,623	+				-0.6
2,190,626	+				+2.0
2,190,626	+				+2.1
2,190,629	-				+0.9
2,190,631	-				+2.5
2,190,634	-				-0.4
2,190,683	-				-2.4
2,190,688	-				+1.3
2,190,692	-				+0.2
2,190,699	+				-0.2
2,190,706	+				-1.7
2,190,707	-				+0.7
2,190,721	+				-3.1
2,190,745	+				-0.8
2,190,747	+				-1.8
2,190,755	+				-1.3
2,190,755	+				-1.3
2,190,757	+				-1.3
2,190,757	-				+1.3
2,190,772	-				-0.2
2,190,783	-				-1.6
2,190,790	-				-1.9
2,190,790	-				-0.1
2,190,792	+				+0.4
2,190,792	+				-2.4
2,190,792	+				+1.0
2,190,795	-				-0.6
2,190,795	-				-3.0
2,190,800	-				-1.8
2,190,810	+				-2.6
2,190,826	-				-0.7
2,190,860	+				-2.1
2,190,873	-				-1.1
2,190,941	+		BBR_RS21120	0.16	-2.2
2,190,948	+		BBR_RS21120	0.18	-3.4
2,190,948	+		BBR_RS21120	0.18	-0.4
2,190,956	-		BBR_RS21120	0.20	-3.2
2,190,968	+		BBR_RS21120	0.24	-3.5
2,190,968	+		BBR_RS21120	0.24	-2.4
2,190,979	+		BBR_RS21120	0.27	+1.1
2,191,007	-		BBR_RS21120	0.36	-0.5
2,191,007	-		BBR_RS21120	0.36	-1.8
2,191,013	+		BBR_RS21120	0.38	-0.6
2,191,044	+		BBR_RS21120	0.48	+1.1
2,191,062	+		BBR_RS21120	0.53	-0.2
2,191,062	+		BBR_RS21120	0.53	-0.4
2,191,068	-		BBR_RS21120	0.55	+0.4
2,191,080	-		BBR_RS21120	0.59	-4.4
2,191,109	+		BBR_RS21120	0.68	+0.0
2,191,109	+		BBR_RS21120	0.68	-2.7
2,191,118	-		BBR_RS21120	0.71	+0.7
2,191,129	+		BBR_RS21120	0.74	+0.8
2,191,129	+		BBR_RS21120	0.74	-1.9
2,191,129	+		BBR_RS21120	0.74	-2.0
2,191,129	+		BBR_RS21120	0.74	-2.2
2,191,129	+		BBR_RS21120	0.74	-1.5
2,191,129	+		BBR_RS21120	0.74	-3.5
2,191,129	+		BBR_RS21120	0.74	+0.7
2,191,129	+		BBR_RS21120	0.74	-1.7
2,191,129	+		BBR_RS21120	0.74	+0.5
2,191,129	+		BBR_RS21120	0.74	-1.5
2,191,137	-		BBR_RS21120	0.77	-2.9
2,191,137	-		BBR_RS21120	0.77	-3.6
2,191,137	-		BBR_RS21120	0.77	-1.6
2,191,137	-		BBR_RS21120	0.77	+1.3
2,191,137	-		BBR_RS21120	0.77	-1.7
2,191,137	-		BBR_RS21120	0.77	-0.6
2,191,137	-		BBR_RS21120	0.77	-0.2
2,191,137	-		BBR_RS21120	0.77	-1.9
2,191,137	-		BBR_RS21120	0.77	+1.8
2,191,137	-		BBR_RS21120	0.77	-0.1
2,191,137	-		BBR_RS21120	0.77	+0.6
2,191,137	-		BBR_RS21120	0.77	+0.2
2,191,137	-		BBR_RS21120	0.77	-3.4
2,191,137	-		BBR_RS21120	0.77	-2.2
2,191,137	-		BBR_RS21120	0.77	-3.0
2,191,137	-		BBR_RS21120	0.77	-2.7
2,191,137	-		BBR_RS21120	0.77	+1.6
2,191,151	-		BBR_RS21120	0.81	-1.0
2,191,175	+				+1.3
2,191,175	+				-2.4
2,191,175	+				-0.1
2,191,175	+				-1.8
2,191,175	+				-3.7
2,191,175	+				-0.6
2,191,180	+				-2.4
2,191,185	+				-3.2
2,191,208	+				-0.8
2,191,217	-				-4.0
2,191,268	+				-0.5
2,191,431	+		BBR_RS19645	0.12	-4.0
2,191,441	+		BBR_RS19645	0.13	-4.3
2,191,452	+		BBR_RS19645	0.13	-3.1
2,191,456	+		BBR_RS19645	0.14	-1.0
2,191,510	+		BBR_RS19645	0.16	-3.6
2,191,571	-		BBR_RS19645	0.19	-2.6
2,191,621	-		BBR_RS19645	0.21	+0.6
2,191,701	-		BBR_RS19645	0.25	-1.6
2,191,793	+		BBR_RS19645	0.29	-3.1
2,191,866	+		BBR_RS19645	0.32	-3.4
2,191,889	+		BBR_RS19645	0.33	-0.9
2,192,006	-		BBR_RS19645	0.38	-2.6
2,192,011	-		BBR_RS19645	0.38	-0.2
2,192,024	-		BBR_RS19645	0.39	-2.9
2,192,027	+		BBR_RS19645	0.39	-2.3
2,192,051	-		BBR_RS19645	0.40	-3.4
2,192,106	+		BBR_RS19645	0.43	-3.7
2,192,109	-		BBR_RS19645	0.43	-1.1
2,192,122	+		BBR_RS19645	0.43	-0.0
2,192,124	-		BBR_RS19645	0.43	-2.4
2,192,134	-		BBR_RS19645	0.44	-2.1
2,192,152	-		BBR_RS19645	0.45	-3.6
2,192,166	-		BBR_RS19645	0.45	-2.1
2,192,180	+		BBR_RS19645	0.46	-3.3
2,192,207	+		BBR_RS19645	0.47	-5.5
2,192,210	+		BBR_RS19645	0.47	-2.9
2,192,210	+		BBR_RS19645	0.47	-5.7
2,192,249	+		BBR_RS19645	0.49	-3.7
2,192,257	-		BBR_RS19645	0.49	-2.5
2,192,257	-		BBR_RS19645	0.49	-3.1
2,192,260	+		BBR_RS19645	0.50	-3.8
2,192,270	+		BBR_RS19645	0.50	-3.8
2,192,317	-		BBR_RS19645	0.52	-1.0
2,192,318	+		BBR_RS19645	0.52	-0.0
2,192,370	+		BBR_RS19645	0.54	-3.2
2,192,386	+		BBR_RS19645	0.55	-2.9
2,192,386	+		BBR_RS19645	0.55	-2.8
2,192,400	-		BBR_RS19645	0.56	-2.0
2,192,466	+		BBR_RS19645	0.59	-1.7
2,192,468	+		BBR_RS19645	0.59	-3.2
2,192,567	-		BBR_RS19645	0.63	-3.0
2,192,567	-		BBR_RS19645	0.63	-2.2
2,192,567	-		BBR_RS19645	0.63	-2.3
2,192,567	-		BBR_RS19645	0.63	-0.4
2,192,567	-		BBR_RS19645	0.63	-3.0
2,192,569	-		BBR_RS19645	0.63	-1.8
2,192,576	+		BBR_RS19645	0.64	-2.4
2,192,666	+		BBR_RS19645	0.68	-2.4
2,192,681	+		BBR_RS19645	0.68	-1.7
2,192,681	+		BBR_RS19645	0.68	-3.1
2,192,689	-		BBR_RS19645	0.69	-2.9
2,192,689	-		BBR_RS19645	0.69	-3.6
2,192,801	+		BBR_RS19645	0.74	-4.6
2,192,874	+		BBR_RS19645	0.77	-2.9
2,192,891	+		BBR_RS19645	0.78	-2.6
2,192,899	-		BBR_RS19645	0.78	-1.2
2,192,938	-		BBR_RS19645	0.80	-2.9
2,192,962	+		BBR_RS19645	0.81	-2.5
2,193,009	-		BBR_RS19645	0.83	-1.4
2,193,019	-		BBR_RS19645	0.83	-2.5
2,193,065	+		BBR_RS19645	0.85	-2.8
2,193,065	+		BBR_RS19645	0.85	-4.0
2,193,067	-		BBR_RS19645	0.86	-3.4
2,193,150	+		BBR_RS19645	0.89	-2.2
2,193,152	+		BBR_RS19645	0.89	-0.4
2,193,171	-				-0.2
2,193,171	-				-1.0
2,193,193	+				-2.4
2,193,210	-				-0.7
2,193,289	+				-3.3
2,193,294	+				-3.5
2,193,302	+				-4.0
2,193,310	-				-5.2
2,193,310	-				-4.0
2,193,311	+				-3.9
2,193,312	+				-4.3
2,193,312	+				-4.8
2,193,313	+				-4.4
2,193,337	-				-3.7
2,193,355	+				+3.3
2,193,360	+				+2.5
2,193,360	+				+2.2
2,193,370	+				-0.8
2,193,370	+				+0.8
2,193,378	-				-0.1
2,193,378	-				-1.7
2,193,378	-				-3.9
2,193,378	-				-0.7
2,193,379	+				+2.3
2,193,410	+				-1.1
2,193,420	+				+0.6
2,193,420	+				-0.1
2,193,420	+				-0.0
2,193,420	+				+0.0
2,193,430	+				+0.0
2,193,438	-				+0.7
2,193,472	+				+0.8
2,193,474	+				+1.3
2,193,474	+				+2.2
2,193,484	+				+0.3
2,193,513	-				+0.3
2,193,523	-				-0.3
2,193,528	-				-2.9
2,193,528	-				-0.2
2,193,532	+				-0.3
2,193,532	+				-2.5
2,193,532	+				+0.2
2,193,532	+				-0.7
2,193,540	-				+0.9
2,193,542	+				-1.8
2,193,555	+				-1.7
2,193,597	+				-1.2
2,193,605	-				-1.3
2,193,612	+				+1.1
2,193,612	+				-2.2
2,193,612	+				+0.6
2,193,612	+				+0.7
2,193,631	+				-1.0
2,193,633	+				-2.9
2,193,703	+		BBR_RS19650	0.11	-3.3
2,193,716	-		BBR_RS19650	0.12	-0.9
2,193,735	+		BBR_RS19650	0.13	-2.3
2,193,735	+		BBR_RS19650	0.13	-2.7
2,193,735	+		BBR_RS19650	0.13	-0.4
2,193,737	+		BBR_RS19650	0.14	-0.2
2,193,737	+		BBR_RS19650	0.14	-1.0
2,193,737	+		BBR_RS19650	0.14	+1.1
2,193,737	+		BBR_RS19650	0.14	-2.9
2,193,737	+		BBR_RS19650	0.14	-3.3
2,193,738	-		BBR_RS19650	0.14	-1.2
2,193,743	-		BBR_RS19650	0.14	+0.5
2,193,743	-		BBR_RS19650	0.14	-0.5
2,193,743	-		BBR_RS19650	0.14	-0.7
2,193,745	-		BBR_RS19650	0.14	-1.0
2,193,745	-		BBR_RS19650	0.14	-1.7
2,193,745	-		BBR_RS19650	0.14	+0.2
2,193,745	-		BBR_RS19650	0.14	-1.4
2,193,745	-		BBR_RS19650	0.14	-1.6
2,193,745	-		BBR_RS19650	0.14	-3.4
2,193,745	-		BBR_RS19650	0.14	-3.7
2,193,745	-		BBR_RS19650	0.14	-0.7
2,193,757	+		BBR_RS19650	0.15	+1.1
2,193,757	+		BBR_RS19650	0.15	-1.0
2,193,762	+		BBR_RS19650	0.15	-1.9
2,193,765	-		BBR_RS19650	0.16	+1.4
2,193,765	-		BBR_RS19650	0.16	-2.4
2,193,765	-		BBR_RS19650	0.16	-0.8
2,193,765	-		BBR_RS19650	0.16	-1.9
2,193,765	-		BBR_RS19650	0.16	-0.2
2,193,765	-		BBR_RS19650	0.16	-1.9
2,193,765	-		BBR_RS19650	0.16	-1.5
2,193,800	-		BBR_RS19650	0.18	-3.1
2,193,800	-		BBR_RS19650	0.18	-2.1
2,193,804	+		BBR_RS19650	0.18	-0.6
2,193,827	+		BBR_RS19650	0.20	-1.0
2,193,827	+		BBR_RS19650	0.20	-0.0
2,193,835	-		BBR_RS19650	0.21	-2.2
2,193,855	-		BBR_RS19650	0.22	-1.5
2,193,855	-		BBR_RS19650	0.22	-1.5
2,193,867	-		BBR_RS19650	0.23	+0.6
2,193,871	+		BBR_RS19650	0.23	-1.8
2,193,872	-		BBR_RS19650	0.23	-3.0
2,193,889	-		BBR_RS19650	0.24	-0.9
2,193,895	+		BBR_RS19650	0.25	-1.0
2,193,903	-		BBR_RS19650	0.25	-0.5
2,193,925	-		BBR_RS19650	0.27	+0.7
2,193,931	-		BBR_RS19650	0.27	-2.3
2,193,935	+		BBR_RS19650	0.28	-0.4
2,193,940	-		BBR_RS19650	0.28	+0.5
2,193,940	-		BBR_RS19650	0.28	-0.9
2,193,944	+		BBR_RS19650	0.28	+0.8
2,193,952	-		BBR_RS19650	0.29	-1.8
2,193,985	+		BBR_RS19650	0.31	-3.1
2,193,985	+		BBR_RS19650	0.31	-1.1
2,193,985	+		BBR_RS19650	0.31	-1.6
2,193,990	+		BBR_RS19650	0.31	-2.0
2,193,990	+		BBR_RS19650	0.31	-1.9
2,193,998	-		BBR_RS19650	0.32	-1.5
2,193,998	-		BBR_RS19650	0.32	-0.2
2,193,998	-		BBR_RS19650	0.32	-2.9
2,194,001	+		BBR_RS19650	0.32	-3.1
2,194,020	-		BBR_RS19650	0.34	-1.0
2,194,026	+		BBR_RS19650	0.34	-0.5
2,194,034	-		BBR_RS19650	0.35	-3.3
2,194,034	-		BBR_RS19650	0.35	+0.9
2,194,060	-		BBR_RS19650	0.36	-0.4
2,194,073	+		BBR_RS19650	0.37	-1.0
2,194,083	+		BBR_RS19650	0.38	-1.5
2,194,097	-		BBR_RS19650	0.39	-1.9
2,194,098	+		BBR_RS19650	0.39	-3.4
2,194,107	+		BBR_RS19650	0.40	-1.5
2,194,128	+		BBR_RS19650	0.41	+1.0
2,194,144	-		BBR_RS19650	0.42	+0.2
2,194,146	-		BBR_RS19650	0.43	-2.7
2,194,179	+		BBR_RS19650	0.45	+1.3
2,194,189	+		BBR_RS19650	0.46	-1.1
2,194,193	+		BBR_RS19650	0.46	+0.4
2,194,202	+		BBR_RS19650	0.46	-1.0
2,194,210	-		BBR_RS19650	0.47	+1.1
2,194,250	-		BBR_RS19650	0.50	-1.4
2,194,255	-		BBR_RS19650	0.50	-0.8
2,194,257	+		BBR_RS19650	0.50	+0.2
2,194,270	+		BBR_RS19650	0.51	-0.4
2,194,270	+		BBR_RS19650	0.51	+0.3
2,194,270	+		BBR_RS19650	0.51	-0.2
2,194,270	+		BBR_RS19650	0.51	-2.1
2,194,270	+		BBR_RS19650	0.51	-0.8
2,194,270	+		BBR_RS19650	0.51	+1.5
2,194,270	+		BBR_RS19650	0.51	-0.1
2,194,272	+		BBR_RS19650	0.51	-0.5
2,194,276	-		BBR_RS19650	0.52	-1.3
2,194,278	-		BBR_RS19650	0.52	-2.3
2,194,278	-		BBR_RS19650	0.52	-2.9
2,194,282	+		BBR_RS19650	0.52	-0.9
2,194,282	+		BBR_RS19650	0.52	+0.1
2,194,284	+		BBR_RS19650	0.52	-1.6
2,194,290	-		BBR_RS19650	0.53	-1.9
2,194,317	+		BBR_RS19650	0.55	+0.6
2,194,324	+		BBR_RS19650	0.55	+0.0
2,194,325	-		BBR_RS19650	0.55	-0.2
2,194,325	-		BBR_RS19650	0.55	+0.1
2,194,338	+		BBR_RS19650	0.56	-1.4
2,194,349	+		BBR_RS19650	0.57	-0.2
2,194,349	-		BBR_RS19650	0.57	-1.9
2,194,362	-		BBR_RS19650	0.58	-1.5
2,194,374	+		BBR_RS19650	0.59	-0.2
2,194,374	+		BBR_RS19650	0.59	-0.4
2,194,375	-		BBR_RS19650	0.59	+2.3
2,194,382	-		BBR_RS19650	0.59	-2.1
2,194,382	-		BBR_RS19650	0.59	-2.0
2,194,382	-		BBR_RS19650	0.59	-0.7