Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19360

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
2,116,653	-		BBR_RS21105	0.55	-2.5
2,116,663	-		BBR_RS21105	0.56	+0.7
2,116,674	-		BBR_RS21105	0.58	-2.1
2,116,674	-		BBR_RS21105	0.58	-0.3
2,116,684	+		BBR_RS21105	0.60	-3.2
2,116,704	+		BBR_RS21105	0.63	-0.8
2,116,704	+		BBR_RS21105	0.63	-4.2
2,116,712	-		BBR_RS21105	0.64	+0.5
2,116,716	+		BBR_RS21105	0.65	-3.2
2,116,734	-		BBR_RS21105	0.67	-0.0
2,116,753	+		BBR_RS21105	0.70	+0.1
2,116,782	+		BBR_RS21105	0.75	-0.7
2,116,782	+		BBR_RS21105	0.75	-2.6
2,116,790	-		BBR_RS21105	0.76	+0.1
2,116,790	-		BBR_RS21105	0.76	-1.1
2,116,796	+		BBR_RS21105	0.77	-1.7
2,116,801	+		BBR_RS21105	0.78	-1.0
2,116,801	+		BBR_RS21105	0.78	-0.8
2,116,801	+		BBR_RS21105	0.78	-2.7
2,116,820	+		BBR_RS21105	0.81	-3.3
2,116,827	+		BBR_RS21105	0.82	-0.7
2,116,846	-		BBR_RS21105	0.85	+1.1
2,116,851	+		BBR_RS21105	0.86	-3.9
2,116,888	+				+1.2
2,116,900	+				-0.7
2,116,903	-				-3.5
2,116,908	-				-1.4
2,116,927	-				-1.0
2,116,929	+				-0.7
2,116,929	+				-2.2
2,116,937	-				-2.7
2,116,986	+				-3.1
2,117,030	+				-0.5
2,117,054	-				+0.1
2,117,059	-				+1.0
2,117,060	-				+0.0
2,117,081	-				-0.2
2,117,086	+				+0.3
2,117,109	+				-0.1
2,117,118	+				-1.2
2,117,118	+				-1.6
2,117,126	-				+0.3
2,117,130	+				-1.0
2,117,179	-				-0.1
2,117,197	+				-2.2
2,117,197	+				-1.4
2,117,225	-				+0.5
2,117,225	-				-0.2
2,117,261	-		BBR_RS19345	0.50	-0.9
2,117,263	-		BBR_RS19345	0.53	+0.1
2,117,268	-		BBR_RS19345	0.59	-0.0
2,117,274	+		BBR_RS19345	0.67	-2.9
2,117,303	-				-0.2
2,117,338	+				-1.6
2,117,346	-				-2.5
2,117,367	+		BBR_RS19350	0.28	-2.3
2,117,375	-		BBR_RS19350	0.39	+0.3
2,117,376	+		BBR_RS19350	0.40	-0.9
2,117,384	-		BBR_RS19350	0.51	+1.0
2,117,384	-		BBR_RS19350	0.51	+1.3
2,117,499	-		BBR_RS19355	0.47	-0.6
2,117,499	-		BBR_RS19355	0.47	-3.0
2,117,509	-		BBR_RS19355	0.60	-2.4
2,117,588	-				-4.1
2,117,602	-				-2.2
2,117,602	-				-2.9
2,117,618	+				-3.0
2,117,667	-		BBR_RS19360	0.13	-2.7
2,117,667	-		BBR_RS19360	0.13	-1.3
2,117,675	-		BBR_RS19360	0.16	-1.7
2,117,680	+		BBR_RS19360	0.19	-0.3
2,117,680	-		BBR_RS19360	0.19	-3.4
2,117,700	+		BBR_RS19360	0.28	-2.3
2,117,706	+		BBR_RS19360	0.30	-1.2
2,117,709	-		BBR_RS19360	0.32	-1.0
2,117,718	-		BBR_RS19360	0.36	-1.3
2,117,733	-		BBR_RS19360	0.42	-3.0
2,117,733	-		BBR_RS19360	0.42	+0.8
2,117,736	+		BBR_RS19360	0.44	-1.2
2,117,743	+		BBR_RS19360	0.47	-3.2
2,117,743	+		BBR_RS19360	0.47	-1.0
2,117,744	+		BBR_RS19360	0.47	-0.9
2,117,744	+		BBR_RS19360	0.47	+0.8
2,117,744	+		BBR_RS19360	0.47	+0.7
2,117,752	-		BBR_RS19360	0.51	+0.2
2,117,752	-		BBR_RS19360	0.51	-0.7
2,117,754	-		BBR_RS19360	0.52	-1.4
2,117,769	+		BBR_RS19360	0.58	+0.5
2,117,782	+		BBR_RS19360	0.64	+0.2
2,117,790	-		BBR_RS19360	0.68	-0.3
2,117,798	+		BBR_RS19360	0.71	-4.1
2,117,849	-				+0.3
2,117,865	-				-1.4
2,117,906	-				+0.7
2,117,961	+				+0.9
2,117,961	+				-0.0
2,117,974	-				-0.3
2,117,980	-				-1.0
2,117,989	+				+1.9
2,117,989	+				+0.1
2,117,989	+				-0.8
2,117,997	-		BBR_RS19365	0.11	-2.5
2,117,997	-		BBR_RS19365	0.11	-0.7
2,118,003	+		BBR_RS19365	0.12	+1.7
2,118,003	-		BBR_RS19365	0.12	+0.2
2,118,009	+		BBR_RS19365	0.14	+1.5
2,118,016	+		BBR_RS19365	0.15	-0.1
2,118,016	+		BBR_RS19365	0.15	+2.3
2,118,021	+		BBR_RS19365	0.16	+0.6
2,118,023	-		BBR_RS19365	0.17	+0.5
2,118,037	-		BBR_RS19365	0.20	-1.1
2,118,044	+		BBR_RS19365	0.22	+1.3
2,118,044	+		BBR_RS19365	0.22	+0.7
2,118,067	-		BBR_RS19365	0.27	+0.0
2,118,083	-		BBR_RS19365	0.31	+0.2
2,118,085	+		BBR_RS19365	0.31	-0.2
2,118,098	-		BBR_RS19365	0.34	-0.6
2,118,098	-		BBR_RS19365	0.34	-1.8
2,118,147	-		BBR_RS19365	0.45	-0.4
2,118,173	+		BBR_RS19365	0.52	+1.0
2,118,183	+		BBR_RS19365	0.54	+0.9
2,118,210	+		BBR_RS19365	0.60	+1.6
2,118,220	+		BBR_RS19365	0.62	+0.7
2,118,227	+		BBR_RS19365	0.64	+0.7
2,118,227	+		BBR_RS19365	0.64	-0.2
2,118,227	+		BBR_RS19365	0.64	-2.7
2,118,227	+		BBR_RS19365	0.64	-0.0
2,118,228	-		BBR_RS19365	0.64	+0.7
2,118,228	-		BBR_RS19365	0.64	-0.8
2,118,228	-		BBR_RS19365	0.64	-3.5
2,118,240	-		BBR_RS19365	0.67	-0.0
2,118,254	+		BBR_RS19365	0.70	+1.6
2,118,254	+		BBR_RS19365	0.70	+0.8
2,118,262	-		BBR_RS19365	0.72	+0.4
2,118,264	+		BBR_RS19365	0.73	+0.9
2,118,272	-		BBR_RS19365	0.74	-0.0
2,118,272	-		BBR_RS19365	0.74	-0.2
2,118,272	-		BBR_RS19365	0.74	-0.9
2,118,277	-		BBR_RS19365	0.76	+0.5
2,118,281	+		BBR_RS19365	0.76	+0.4
2,118,288	+		BBR_RS19365	0.78	+1.7
2,118,296	-		BBR_RS19365	0.80	-0.5
2,118,296	-		BBR_RS19365	0.80	+0.1
2,118,296	-		BBR_RS19365	0.80	-1.6
2,118,296	-		BBR_RS19365	0.80	+0.0
2,118,306	+		BBR_RS19365	0.82	+1.2
2,118,306	+		BBR_RS19365	0.82	+0.3
2,118,310	+		BBR_RS19365	0.83	+0.4
2,118,314	-		BBR_RS19365	0.84	+1.0
2,118,318	-		BBR_RS19365	0.85	-1.5
2,118,320	+		BBR_RS19365	0.85	+0.1
2,118,325	+		BBR_RS19365	0.87	+0.7
2,118,349	+				-1.5
2,118,377	+				+1.5
2,118,377	+				-0.4
2,118,380	-				-1.9
2,118,380	-				-0.4
2,118,380	-				-2.7
2,118,380	-				-0.3
2,118,380	-				-0.7
2,118,387	-				-0.6
2,118,390	-				-2.3
2,118,401	-				+2.0
2,118,441	+				+0.8
2,118,441	+				-1.7
2,118,444	-				-0.5
2,118,449	-				+0.2
2,118,475	-				-0.5
2,118,515	+				-0.7
2,118,515	+				+0.9
2,118,515	+				+0.6
2,118,515	+				-0.4
2,118,515	+				-2.3
2,118,515	+				+0.7
2,118,515	+				-0.7
2,118,515	+				+0.6
2,118,515	+				-1.0
2,118,517	-				-0.3
2,118,523	-				-3.7
2,118,523	-				-1.2
2,118,524	-				-0.8
2,118,532	+				-0.8
2,118,540	-				-0.1
2,118,540	-				-0.4
2,118,540	-				-0.2
2,118,560	-				-3.3
2,118,597	+				+1.4
2,118,610	-				-0.1
2,118,619	+				+0.5
2,118,620	-				-0.6
2,118,620	-				-2.4
2,118,632	+				+0.1
2,118,641	+				+0.6
2,118,642	+				+0.9
2,118,642	+				-0.7
2,118,656	+				-1.0
2,118,682	-				+0.0
2,118,717	-		BBR_RS21110	0.15	+1.0
2,118,752	+		BBR_RS21110	0.28	-0.1
2,118,752	+		BBR_RS21110	0.28	-0.0
2,118,758	-		BBR_RS21110	0.30	-2.4
2,118,764	+		BBR_RS21110	0.32	-1.7
2,118,769	-		BBR_RS21110	0.34	+0.5
2,118,772	-		BBR_RS21110	0.35	-2.9
2,118,772	-		BBR_RS21110	0.35	-0.5
2,118,794	+		BBR_RS21110	0.43	-2.1
2,118,805	+		BBR_RS21110	0.47	-1.5
2,118,830	+		BBR_RS21110	0.56	+0.7
2,118,835	+		BBR_RS21110	0.58	+0.2