Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18720

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
1,989,170	-				-1.7
1,989,170	-				-2.6
1,989,177	-				+0.2
1,989,216	+				-1.3
1,989,258	+				-0.0
1,989,258	+				+0.8
1,989,266	-				-3.7
1,989,266	-				-0.1
1,989,294	+				-0.5
1,989,324	+				+0.5
1,989,324	+				+0.6
1,989,332	-				+0.2
1,989,366	-				-3.8
1,989,366	-				+0.1
1,989,444	-				-2.4
1,989,457	+				+0.2
1,989,457	+				-3.3
1,989,481	+				-0.1
1,989,481	+				-0.6
1,989,481	+				-1.0
1,989,486	+				-0.9
1,989,486	+				+0.7
1,989,486	+				+0.1
1,989,496	+		BBR_RS18715	0.12	+0.5
1,989,515	+		BBR_RS18715	0.16	+0.5
1,989,522	+		BBR_RS18715	0.18	+1.5
1,989,535	+		BBR_RS18715	0.21	+2.2
1,989,541	+		BBR_RS18715	0.22	-0.4
1,989,541	+		BBR_RS18715	0.22	+2.6
1,989,541	+		BBR_RS18715	0.22	+1.8
1,989,565	+		BBR_RS18715	0.28	+1.4
1,989,566	+		BBR_RS18715	0.28	+1.7
1,989,585	+		BBR_RS18715	0.32	+0.3
1,989,585	+		BBR_RS18715	0.32	+0.4
1,989,591	+		BBR_RS18715	0.34	+0.8
1,989,601	+		BBR_RS18715	0.36	+1.1
1,989,605	+		BBR_RS18715	0.37	-0.2
1,989,651	+		BBR_RS18715	0.47	+1.5
1,989,656	+		BBR_RS18715	0.49	+1.5
1,989,657	+		BBR_RS18715	0.49	+0.3
1,989,661	+		BBR_RS18715	0.50	-2.4
1,989,670	+		BBR_RS18715	0.52	-1.4
1,989,725	+		BBR_RS18715	0.65	+1.8
1,989,735	+		BBR_RS18715	0.67	-0.2
1,989,735	+		BBR_RS18715	0.67	+0.3
1,989,740	+		BBR_RS18715	0.68	-0.1
1,989,761	+		BBR_RS18715	0.73	+0.3
1,989,761	+		BBR_RS18715	0.73	+1.3
1,989,761	+		BBR_RS18715	0.73	-0.0
1,989,782	+		BBR_RS18715	0.78	+1.6
1,989,793	+		BBR_RS18715	0.80	+1.4
1,989,798	+		BBR_RS18715	0.81	+1.1
1,989,798	+		BBR_RS18715	0.81	-0.1
1,989,798	+		BBR_RS18715	0.81	-0.3
1,989,798	+		BBR_RS18715	0.81	+0.7
1,989,807	+		BBR_RS18715	0.84	+2.2
1,989,807	+		BBR_RS18715	0.84	+1.7
1,989,819	+		BBR_RS18715	0.86	+1.0
1,989,829	+		BBR_RS18715	0.89	-2.1
1,989,881	+				-2.0
1,989,889	-				-2.1
1,989,894	-				+0.8
1,989,900	-				-0.0
1,989,915	-				-0.4
1,989,929	+				-1.7
1,989,936	+				+0.2
1,989,944	-				+0.3
1,989,954	+				+0.6
1,989,995	+				-1.0
1,990,014	+				+0.3
1,990,014	+				+0.9
1,990,014	+				+1.8
1,990,014	+				-0.2
1,990,014	-				+1.5
1,990,022	-				-2.4
1,990,022	-				-0.7
1,990,022	-				-3.9
1,990,022	-				-0.4
1,990,039	+				-1.6
1,990,054	+				-2.7
1,990,054	+				+0.1
1,990,054	+				-0.2
1,990,062	-				+0.9
1,990,067	-				+1.0
1,990,069	+				+0.3
1,990,069	+				+0.3
1,990,077	-				+0.0
1,990,086	+				+0.2
1,990,086	+				-0.1
1,990,086	+				+0.6
1,990,089	-				-0.1
1,990,092	-				-0.1
1,990,092	-				+0.0
1,990,092	-				-0.6
1,990,092	-				-0.5
1,990,092	-				+0.6
1,990,094	+				+0.4
1,990,102	-				+0.0
1,990,109	-				-0.4
1,990,147	-				+0.7
1,990,147	-				-1.7
1,990,148	+				+0.5
1,990,158	-				-0.4
1,990,164	-				-0.2
1,990,183	-				+0.9
1,990,202	+				-0.3
1,990,202	+				-0.4
1,990,202	-				-3.4
1,990,215	-				+2.2
1,990,228	+				-1.7
1,990,228	+				+0.1
1,990,228	+				-1.7
1,990,229	+				+0.6
1,990,233	+				-1.3
1,990,236	-				+1.2
1,990,237	-				-0.1
1,990,244	-				-3.1
1,990,249	+				-0.1
1,990,262	-				+1.8
1,990,278	+				+1.0
1,990,297	+				-0.3
1,990,300	-				-0.5
1,990,315	+		BBR_RS18720	0.10	+1.3
1,990,449	+		BBR_RS18720	0.19	-0.7
1,990,449	+		BBR_RS18720	0.19	-1.8
1,990,449	+		BBR_RS18720	0.19	+0.8
1,990,457	-		BBR_RS18720	0.20	+1.1
1,990,500	-		BBR_RS18720	0.23	+1.4
1,990,505	-		BBR_RS18720	0.23	+2.0
1,990,522	-		BBR_RS18720	0.24	-0.6
1,990,648	-		BBR_RS18720	0.32	+1.3
1,990,648	-		BBR_RS18720	0.32	+0.1
1,990,652	-		BBR_RS18720	0.33	+1.6
1,990,658	+		BBR_RS18720	0.33	-1.4
1,990,658	+		BBR_RS18720	0.33	-0.5
1,990,663	+		BBR_RS18720	0.33	+1.2
1,990,666	-		BBR_RS18720	0.34	+0.3
1,990,668	+		BBR_RS18720	0.34	-2.8
1,990,671	-		BBR_RS18720	0.34	-3.3
1,990,671	-		BBR_RS18720	0.34	+0.7
1,990,673	+		BBR_RS18720	0.34	+1.7
1,990,673	+		BBR_RS18720	0.34	-1.1
1,990,673	+		BBR_RS18720	0.34	-1.5
1,990,681	-		BBR_RS18720	0.35	-1.6
1,990,681	-		BBR_RS18720	0.35	+1.6
1,990,681	-		BBR_RS18720	0.35	-0.8
1,990,719	+		BBR_RS18720	0.37	+0.8
1,990,724	+		BBR_RS18720	0.37	-0.1
1,990,727	-		BBR_RS18720	0.38	+1.1
1,990,732	-		BBR_RS18720	0.38	+0.0
1,990,733	+		BBR_RS18720	0.38	+1.1
1,990,770	-		BBR_RS18720	0.40	+0.3
1,990,772	+		BBR_RS18720	0.41	+0.4
1,990,784	+		BBR_RS18720	0.41	+0.6
1,990,784	+		BBR_RS18720	0.41	-0.6
1,990,789	+		BBR_RS18720	0.42	+1.4
1,990,792	-		BBR_RS18720	0.42	-2.3
1,990,792	-		BBR_RS18720	0.42	-0.2
1,990,792	-		BBR_RS18720	0.42	-1.0
1,990,817	+		BBR_RS18720	0.44	-1.6
1,990,847	+		BBR_RS18720	0.46	-1.1
1,990,857	-		BBR_RS18720	0.46	-0.4
1,990,857	-		BBR_RS18720	0.46	-2.9
1,990,863	-		BBR_RS18720	0.47	+2.2
1,990,891	-		BBR_RS18720	0.48	+0.9
1,990,912	+		BBR_RS18720	0.50	-1.6
1,990,933	-		BBR_RS18720	0.51	-2.9
1,990,940	+		BBR_RS18720	0.52	+1.0
1,990,945	+		BBR_RS18720	0.52	-0.8
1,990,957	+		BBR_RS18720	0.53	+2.4
1,990,965	-		BBR_RS18720	0.53	+0.9
1,990,970	-		BBR_RS18720	0.54	+1.0
1,990,995	+		BBR_RS18720	0.55	+0.5
1,991,000	+		BBR_RS18720	0.56	-2.4
1,991,019	+		BBR_RS18720	0.57	+1.0
1,991,022	-		BBR_RS18720	0.57	+1.2
1,991,022	-		BBR_RS18720	0.57	+0.0
1,991,029	+		BBR_RS18720	0.58	-0.6
1,991,032	-		BBR_RS18720	0.58	-2.2
1,991,040	-		BBR_RS18720	0.58	-0.3
1,991,049	+		BBR_RS18720	0.59	-0.9
1,991,049	+		BBR_RS18720	0.59	+0.6
1,991,049	-		BBR_RS18720	0.59	+0.8
1,991,052	-		BBR_RS18720	0.59	+1.2
1,991,060	+		BBR_RS18720	0.60	+0.4
1,991,101	-		BBR_RS18720	0.62	+0.8
1,991,101	-		BBR_RS18720	0.62	+0.0
1,991,121	-		BBR_RS18720	0.64	-0.7
1,991,142	+		BBR_RS18720	0.65	-1.4
1,991,150	-		BBR_RS18720	0.66	-1.1
1,991,150	-		BBR_RS18720	0.66	-2.7
1,991,150	-		BBR_RS18720	0.66	-2.0
1,991,161	-		BBR_RS18720	0.66	-1.9
1,991,180	+		BBR_RS18720	0.68	+2.5
1,991,188	+		BBR_RS18720	0.68	+0.8
1,991,196	-		BBR_RS18720	0.69	+0.5
1,991,203	+		BBR_RS18720	0.69	-0.6
1,991,209	-		BBR_RS18720	0.70	-0.0
1,991,221	-		BBR_RS18720	0.70	+1.0
1,991,230	+		BBR_RS18720	0.71	+0.3
1,991,232	+		BBR_RS18720	0.71	-1.0
1,991,232	-		BBR_RS18720	0.71	+0.9
1,991,246	+		BBR_RS18720	0.72	+0.3
1,991,269	-		BBR_RS18720	0.73	-1.9
1,991,269	-		BBR_RS18720	0.73	+1.2
1,991,271	-		BBR_RS18720	0.74	-1.5
1,991,280	+		BBR_RS18720	0.74	-1.8
1,991,285	+		BBR_RS18720	0.75	+0.2
1,991,303	-		BBR_RS18720	0.76	+1.1
1,991,303	-		BBR_RS18720	0.76	+0.8
1,991,305	+		BBR_RS18720	0.76	+1.2
1,991,305	+		BBR_RS18720	0.76	-0.9
1,991,313	-		BBR_RS18720	0.76	+0.1
1,991,313	-		BBR_RS18720	0.76	-2.3
1,991,313	-		BBR_RS18720	0.76	+0.5
1,991,313	-		BBR_RS18720	0.76	+1.5
1,991,313	-		BBR_RS18720	0.76	-1.1
1,991,343	+		BBR_RS18720	0.78	-0.0
1,991,346	-		BBR_RS18720	0.79	-0.5
1,991,346	-		BBR_RS18720	0.79	-1.2
1,991,361	-		BBR_RS18720	0.80	+0.9
1,991,364	+		BBR_RS18720	0.80	+2.3
1,991,370	-		BBR_RS18720	0.80	+0.6
1,991,372	-		BBR_RS18720	0.80	+2.0
1,991,418	-		BBR_RS18720	0.83	-1.8
1,991,418	-		BBR_RS18720	0.83	+0.2
1,991,477	+		BBR_RS18720	0.87	-2.5
1,991,523	+				+0.0
1,991,523	+				+1.0
1,991,523	-				-0.5
1,991,523	-				+0.9
1,991,531	-				-0.7
1,991,531	-				+0.2
1,991,533	-				+1.5
1,991,536	-				-0.1
1,991,565	-				-3.8
1,991,596	+				+0.8
1,991,596	+				+0.7
1,991,599	-				+0.8
1,991,604	-				+0.2
1,991,604	-				+0.3
1,991,627	+				-1.9
1,991,645	+				+0.8
1,991,645	+				+0.5
1,991,653	-				+0.3
1,991,656	+				-0.2
1,991,685	+				-0.6
1,991,702	-				-0.9
1,991,702	-				-1.0
1,991,702	-				+0.1
1,991,712	-				+0.7
1,991,721	-				+0.8
1,992,290	+		BBR_RS18725	0.52	-2.8
1,992,312	+		BBR_RS18725	0.54	-1.6
1,992,317	+		BBR_RS18725	0.54	-0.4
1,992,351	-		BBR_RS18725	0.57	-1.7
1,992,384	-		BBR_RS18725	0.60	-3.1
1,992,429	+		BBR_RS18725	0.64	-2.4
1,992,429	+		BBR_RS18725	0.64	-2.7
1,992,481	-		BBR_RS18725	0.69	-2.7
1,992,614	-		BBR_RS18725	0.81	-2.6