Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17960

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
1,813,703	-		BBR_RS17955	0.17	-0.9
1,813,705	+		BBR_RS17955	0.17	-2.9
1,813,705	+		BBR_RS17955	0.17	-1.7
1,813,705	+		BBR_RS17955	0.17	-0.2
1,813,708	-		BBR_RS17955	0.17	+0.9
1,813,710	+		BBR_RS17955	0.17	-2.0
1,813,713	-		BBR_RS17955	0.18	-0.5
1,813,713	-		BBR_RS17955	0.18	-0.0
1,813,721	-		BBR_RS17955	0.18	-0.5
1,813,734	+		BBR_RS17955	0.19	+0.9
1,813,790	+		BBR_RS17955	0.24	-4.0
1,813,792	-		BBR_RS17955	0.24	-1.3
1,813,818	-		BBR_RS17955	0.27	-2.4
1,813,824	-		BBR_RS17955	0.27	-1.3
1,813,832	-		BBR_RS17955	0.28	-1.0
1,813,832	-		BBR_RS17955	0.28	-1.1
1,813,900	+		BBR_RS17955	0.34	+1.1
1,813,922	-		BBR_RS17955	0.36	+0.5
1,813,926	+		BBR_RS17955	0.36	-2.4
1,813,926	+		BBR_RS17955	0.36	-3.2
1,813,928	+		BBR_RS17955	0.36	-1.8
1,813,930	-		BBR_RS17955	0.37	-1.0
1,813,944	-		BBR_RS17955	0.38	-1.1
1,813,965	-		BBR_RS17955	0.40	+0.2
1,813,970	+		BBR_RS17955	0.40	-1.5
1,813,978	-		BBR_RS17955	0.41	-1.4
1,813,980	-		BBR_RS17955	0.41	+0.2
1,813,986	-		BBR_RS17955	0.41	-1.9
1,813,986	-		BBR_RS17955	0.41	+1.6
1,813,986	-		BBR_RS17955	0.41	-1.2
1,814,014	+		BBR_RS17955	0.44	-0.4
1,814,014	+		BBR_RS17955	0.44	+0.1
1,814,079	+		BBR_RS17955	0.50	-1.2
1,814,083	-		BBR_RS17955	0.50	+0.7
1,814,093	-		BBR_RS17955	0.51	-0.2
1,814,109	+		BBR_RS17955	0.52	-0.9
1,814,109	+		BBR_RS17955	0.52	+0.2
1,814,112	+		BBR_RS17955	0.53	+0.7
1,814,178	-		BBR_RS17955	0.58	+1.4
1,814,184	+		BBR_RS17955	0.59	-2.3
1,814,189	+		BBR_RS17955	0.59	+1.0
1,814,192	-		BBR_RS17955	0.60	-0.6
1,814,192	-		BBR_RS17955	0.60	-0.6
1,814,202	+		BBR_RS17955	0.60	+0.5
1,814,211	-		BBR_RS17955	0.61	+0.3
1,814,245	+		BBR_RS17955	0.64	+0.2
1,814,253	+		BBR_RS17955	0.65	-0.4
1,814,261	-		BBR_RS17955	0.66	+1.7
1,814,263	+		BBR_RS17955	0.66	-2.3
1,814,263	+		BBR_RS17955	0.66	-0.3
1,814,266	-		BBR_RS17955	0.66	+0.3
1,814,299	+		BBR_RS17955	0.69	-1.2
1,814,307	-		BBR_RS17955	0.70	+0.0
1,814,307	-		BBR_RS17955	0.70	-1.2
1,814,307	-		BBR_RS17955	0.70	+0.8
1,814,327	+		BBR_RS17955	0.71	+0.2
1,814,409	+		BBR_RS17955	0.79	+0.3
1,814,419	+		BBR_RS17955	0.79	-0.1
1,814,505	-		BBR_RS17955	0.87	-3.3
1,814,510	-		BBR_RS17955	0.87	-0.5
1,814,510	-		BBR_RS17955	0.87	-0.3
1,814,564	+				+0.9
1,814,565	-				-1.9
1,814,565	-				-0.3
1,814,585	-				-2.0
1,814,616	-				-1.0
1,814,631	-				+1.7
1,814,637	+				-3.4
1,814,647	+				-0.3
1,814,723	-				+0.1
1,814,725	+				+0.6
1,814,728	-				+0.4
1,814,738	-				-3.2
1,814,738	-				+0.0
1,814,761	+				-0.3
1,814,787	-		BBR_RS17960	0.10	-1.9
1,814,794	-		BBR_RS17960	0.11	-2.0
1,814,832	-		BBR_RS17960	0.15	-0.6
1,814,844	+		BBR_RS17960	0.16	+0.9
1,814,861	+		BBR_RS17960	0.18	-3.3
1,814,871	+		BBR_RS17960	0.19	-2.3
1,814,877	-		BBR_RS17960	0.20	-2.7
1,814,924	+		BBR_RS17960	0.25	-1.0
1,814,977	-		BBR_RS17960	0.30	+0.9
1,814,996	+		BBR_RS17960	0.32	-2.3
1,814,996	+		BBR_RS17960	0.32	-0.6
1,814,996	+		BBR_RS17960	0.32	+0.1
1,814,996	+		BBR_RS17960	0.32	-0.3
1,814,996	+		BBR_RS17960	0.32	-2.3
1,815,004	-		BBR_RS17960	0.33	-1.0
1,815,004	-		BBR_RS17960	0.33	-1.9
1,815,004	-		BBR_RS17960	0.33	+3.1
1,815,004	-		BBR_RS17960	0.33	-1.2
1,815,004	-		BBR_RS17960	0.33	+0.1
1,815,019	+		BBR_RS17960	0.34	-2.6
1,815,019	+		BBR_RS17960	0.34	-1.7
1,815,019	+		BBR_RS17960	0.34	-0.4
1,815,027	-		BBR_RS17960	0.35	-0.9
1,815,052	-		BBR_RS17960	0.38	-1.5
1,815,097	-		BBR_RS17960	0.42	-2.8
1,815,107	-		BBR_RS17960	0.43	-3.3
1,815,107	-		BBR_RS17960	0.43	-3.8
1,815,107	-		BBR_RS17960	0.43	-3.0
1,815,174	-		BBR_RS17960	0.50	-1.4
1,815,183	+		BBR_RS17960	0.51	-2.7
1,815,193	+		BBR_RS17960	0.52	-1.6
1,815,204	-		BBR_RS17960	0.53	-2.3
1,815,224	+		BBR_RS17960	0.56	-3.0
1,815,255	+		BBR_RS17960	0.59	-1.4
1,815,296	-		BBR_RS17960	0.63	+0.6
1,815,307	+		BBR_RS17960	0.64	-2.0
1,815,312	+		BBR_RS17960	0.65	-0.8
1,815,317	+		BBR_RS17960	0.65	-3.2
1,815,317	+		BBR_RS17960	0.65	-3.1
1,815,317	+		BBR_RS17960	0.65	-2.4
1,815,318	-		BBR_RS17960	0.65	+0.8
1,815,325	-		BBR_RS17960	0.66	+0.1
1,815,325	-		BBR_RS17960	0.66	-1.2
1,815,325	-		BBR_RS17960	0.66	+0.8
1,815,325	-		BBR_RS17960	0.66	+0.7
1,815,329	-		BBR_RS17960	0.66	-1.0
1,815,329	-		BBR_RS17960	0.66	+0.9
1,815,329	-		BBR_RS17960	0.66	-2.1
1,815,329	-		BBR_RS17960	0.66	+0.1
1,815,331	-		BBR_RS17960	0.67	-2.8
1,815,339	+		BBR_RS17960	0.67	-0.4
1,815,455	-		BBR_RS17960	0.79	-0.0
1,815,455	-		BBR_RS17960	0.79	+1.4
1,815,549	-		BBR_RS17960	0.89	-2.9
1,815,605	-				-0.5
1,815,670	-				+0.1
1,815,680	+				-1.7
1,815,687	+				-1.5
1,815,690	+				+0.3
1,815,690	+				-0.3
1,815,696	-				+1.9
1,815,696	-				-2.3
1,815,703	+				-1.6
1,815,706	-				+0.1
1,815,711	-				-0.7
1,815,736	+				-0.1
1,815,746	-				-0.5
1,815,746	-				-0.8
1,815,785	-				+1.4
1,815,817	-				-1.2
1,815,828	+				+0.8
1,815,834	-		BBR_RS17965	0.10	+1.3
1,815,886	-		BBR_RS17965	0.15	-3.7
1,815,886	-		BBR_RS17965	0.15	+0.0
1,815,917	-		BBR_RS17965	0.17	-1.4
1,815,964	-		BBR_RS17965	0.21	-1.1
1,815,985	+		BBR_RS17965	0.23	-0.8
1,815,988	-		BBR_RS17965	0.23	+1.0
1,815,993	-		BBR_RS17965	0.24	+1.0
1,816,003	-		BBR_RS17965	0.24	-0.8
1,816,022	-		BBR_RS17965	0.26	-1.8
1,816,047	-		BBR_RS17965	0.28	+0.1
1,816,061	+		BBR_RS17965	0.29	-0.9
1,816,061	+		BBR_RS17965	0.29	-1.4
1,816,067	-		BBR_RS17965	0.30	-0.9
1,816,080	+		BBR_RS17965	0.31	+0.4
1,816,090	-		BBR_RS17965	0.32	+1.1
1,816,121	-		BBR_RS17965	0.34	-3.0
1,816,157	-		BBR_RS17965	0.37	-3.5
1,816,197	-		BBR_RS17965	0.40	-1.2
1,816,211	+		BBR_RS17965	0.42	-3.1
1,816,228	+		BBR_RS17965	0.43	+0.4
1,816,228	+		BBR_RS17965	0.43	+0.9
1,816,243	-		BBR_RS17965	0.44	-1.7
1,816,265	+		BBR_RS17965	0.46	+0.6
1,816,265	+		BBR_RS17965	0.46	-0.0
1,816,265	+		BBR_RS17965	0.46	-1.0
1,816,273	-		BBR_RS17965	0.47	+0.1
1,816,273	-		BBR_RS17965	0.47	-0.8
1,816,273	-		BBR_RS17965	0.47	-0.3
1,816,273	-		BBR_RS17965	0.47	+0.9
1,816,275	+		BBR_RS17965	0.47	-0.5
1,816,278	-		BBR_RS17965	0.47	-1.2
1,816,329	+		BBR_RS17965	0.51	-2.3
1,816,332	-		BBR_RS17965	0.51	-0.9
1,816,332	-		BBR_RS17965	0.51	-1.2
1,816,337	+		BBR_RS17965	0.52	+0.3
1,816,337	-		BBR_RS17965	0.52	-3.9
1,816,344	+		BBR_RS17965	0.52	-0.3
1,816,347	-		BBR_RS17965	0.53	-1.6
1,816,390	+		BBR_RS17965	0.56	+0.1
1,816,390	+		BBR_RS17965	0.56	-0.4
1,816,398	-		BBR_RS17965	0.57	+0.3
1,816,435	+		BBR_RS17965	0.60	-0.3
1,816,443	-		BBR_RS17965	0.61	+0.1
1,816,443	-		BBR_RS17965	0.61	+0.2
1,816,456	+		BBR_RS17965	0.62	+0.0
1,816,487	-		BBR_RS17965	0.64	+0.0
1,816,499	+		BBR_RS17965	0.65	+0.9
1,816,499	+		BBR_RS17965	0.65	+0.0
1,816,512	-		BBR_RS17965	0.66	-0.9
1,816,514	+		BBR_RS17965	0.67	-1.0
1,816,522	-		BBR_RS17965	0.67	-0.1
1,816,557	+		BBR_RS17965	0.70	-1.5
1,816,557	+		BBR_RS17965	0.70	-2.2
1,816,557	+		BBR_RS17965	0.70	-2.3
1,816,565	-		BBR_RS17965	0.71	-0.0
1,816,575	-		BBR_RS17965	0.72	-0.4
1,816,583	-		BBR_RS17965	0.72	-0.9
1,816,611	-		BBR_RS17965	0.75	-2.5
1,816,611	-		BBR_RS17965	0.75	-3.1