Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17565

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
1,717,722	-				-2.7
1,717,766	+				+1.7
1,717,766	+				-1.0
1,717,766	+				+0.4
1,717,774	-				+0.7
1,717,774	-				-1.6
1,717,774	-				+0.7
1,717,774	-				-0.7
1,717,784	-				-0.1
1,717,808	+				-0.7
1,717,811	-				+0.4
1,717,822	-				+0.6
1,718,719	+				+2.9
1,718,801	+				+0.1
1,718,809	-				+1.0
1,718,814	+				+1.9
1,718,833	+				+2.8
1,718,856	+				+0.1
1,718,867	+		BBR_RS17565	0.10	+0.2
1,718,868	-		BBR_RS17565	0.10	-0.9
1,718,892	-		BBR_RS17565	0.12	+0.8
1,718,893	-		BBR_RS17565	0.12	+1.3
1,718,914	-		BBR_RS17565	0.13	+1.3
1,718,952	-		BBR_RS17565	0.15	-0.5
1,718,954	+		BBR_RS17565	0.16	-0.3
1,719,001	-		BBR_RS17565	0.18	-0.6
1,719,001	-		BBR_RS17565	0.18	+0.9
1,719,003	-		BBR_RS17565	0.19	+1.1
1,719,030	-		BBR_RS17565	0.20	-0.9
1,719,030	-		BBR_RS17565	0.20	-1.0
1,719,044	+		BBR_RS17565	0.21	+2.2
1,719,045	-		BBR_RS17565	0.21	+1.4
1,719,052	-		BBR_RS17565	0.22	-0.9
1,719,052	-		BBR_RS17565	0.22	+1.3
1,719,052	-		BBR_RS17565	0.22	-0.7
1,719,052	-		BBR_RS17565	0.22	+1.5
1,719,076	-		BBR_RS17565	0.23	-0.4
1,719,076	-		BBR_RS17565	0.23	-0.3
1,719,105	+		BBR_RS17565	0.25	+0.8
1,719,110	+		BBR_RS17565	0.25	-2.9
1,719,144	+		BBR_RS17565	0.27	-0.2
1,719,185	+		BBR_RS17565	0.29	+1.1
1,719,203	+		BBR_RS17565	0.31	+1.5
1,719,206	+		BBR_RS17565	0.31	+0.6
1,719,225	+		BBR_RS17565	0.32	+0.6
1,719,292	+		BBR_RS17565	0.36	+1.2
1,719,311	+		BBR_RS17565	0.37	+2.3
1,719,318	-		BBR_RS17565	0.37	-0.4
1,719,338	+		BBR_RS17565	0.39	+1.6
1,719,346	-		BBR_RS17565	0.39	-0.1
1,719,346	-		BBR_RS17565	0.39	-0.1
1,719,363	-		BBR_RS17565	0.40	-1.4
1,719,397	-		BBR_RS17565	0.42	+0.5
1,719,428	-		BBR_RS17565	0.44	+1.7
1,719,430	+		BBR_RS17565	0.44	+1.4
1,719,430	+		BBR_RS17565	0.44	-2.2
1,719,444	-		BBR_RS17565	0.45	-0.2
1,719,454	+		BBR_RS17565	0.46	-1.2
1,719,477	-		BBR_RS17565	0.47	-0.4
1,719,485	-		BBR_RS17565	0.48	+1.3
1,719,487	+		BBR_RS17565	0.48	+0.8
1,719,487	+		BBR_RS17565	0.48	-0.2
1,719,487	+		BBR_RS17565	0.48	+1.0
1,719,488	-		BBR_RS17565	0.48	+0.9
1,719,488	-		BBR_RS17565	0.48	+1.4
1,719,506	+		BBR_RS17565	0.49	+0.4
1,719,533	+		BBR_RS17565	0.50	-0.6
1,719,533	+		BBR_RS17565	0.50	+0.0
1,719,533	+		BBR_RS17565	0.50	+2.6
1,719,541	-		BBR_RS17565	0.51	+0.7
1,719,543	+		BBR_RS17565	0.51	+0.7
1,719,546	-		BBR_RS17565	0.51	-3.0
1,719,551	+		BBR_RS17565	0.51	-0.3
1,719,551	+		BBR_RS17565	0.51	+1.9
1,719,551	-		BBR_RS17565	0.51	-1.6
1,719,561	-		BBR_RS17565	0.52	+0.9
1,719,564	-		BBR_RS17565	0.52	+1.1
1,719,565	+		BBR_RS17565	0.52	+1.3
1,719,567	+		BBR_RS17565	0.52	+1.1
1,719,573	-		BBR_RS17565	0.53	-2.4
1,719,573	-		BBR_RS17565	0.53	+0.7
1,719,586	-		BBR_RS17565	0.54	+1.0
1,719,600	-		BBR_RS17565	0.54	-2.7
1,719,606	+		BBR_RS17565	0.55	+0.2
1,719,709	-		BBR_RS17565	0.61	-0.0
1,719,758	+		BBR_RS17565	0.64	+0.8
1,719,758	+		BBR_RS17565	0.64	+0.6
1,719,766	-		BBR_RS17565	0.64	-0.3
1,719,766	-		BBR_RS17565	0.64	+1.2
1,719,810	+		BBR_RS17565	0.67	+1.7
1,719,842	-		BBR_RS17565	0.69	-0.2
1,719,849	-		BBR_RS17565	0.69	-0.1
1,719,849	-		BBR_RS17565	0.69	-1.2
1,719,860	+		BBR_RS17565	0.70	-0.6
1,719,860	+		BBR_RS17565	0.70	-0.5
1,719,860	+		BBR_RS17565	0.70	-0.0
1,719,868	-		BBR_RS17565	0.71	+0.6
1,719,874	+		BBR_RS17565	0.71	+0.6
1,719,880	-		BBR_RS17565	0.71	+1.9
1,719,880	-		BBR_RS17565	0.71	-0.3
1,719,891	+		BBR_RS17565	0.72	+1.5
1,719,899	-		BBR_RS17565	0.72	-0.5
1,719,899	-		BBR_RS17565	0.72	-2.6
1,719,899	-		BBR_RS17565	0.72	-0.3
1,719,924	-		BBR_RS17565	0.74	+0.1
1,719,960	+		BBR_RS17565	0.76	-3.2
1,719,960	+		BBR_RS17565	0.76	-2.5
1,720,037	+		BBR_RS17565	0.81	+1.1
1,720,070	+		BBR_RS17565	0.83	+0.2
1,720,070	+		BBR_RS17565	0.83	-0.9
1,720,133	+		BBR_RS17565	0.86	+0.5
1,720,148	+		BBR_RS17565	0.87	+1.0
1,720,153	-		BBR_RS17565	0.88	+0.0
1,720,156	-		BBR_RS17565	0.88	+1.8
1,720,179	+		BBR_RS17565	0.89	+1.4
1,720,255	+				+2.4
1,720,255	+				+0.6
1,720,263	-				-0.7
1,720,283	-				+0.6
1,720,283	-				+0.5
1,720,295	-				+0.9
1,720,345	-				-0.8
1,720,355	-				+0.0
1,720,426	+				+0.2
1,720,430	+				-1.0
1,720,438	-				+0.6
1,720,438	-				+0.4
1,720,473	-				+0.9
1,720,480	+				+1.9
1,720,480	+				+1.1
1,720,480	+				-0.9
1,720,482	+				-0.3
1,720,490	-				+1.4
1,720,490	-				-0.1
1,720,490	-				+2.1
1,720,493	-				-0.1
1,720,493	-				+1.8
1,720,523	-				+2.4
1,720,539	-				+1.9
1,720,559	-		BBR_RS17570	0.12	+1.6
1,720,570	+		BBR_RS17570	0.14	+0.3
1,720,588	-		BBR_RS17570	0.16	-1.7
1,720,605	-		BBR_RS17570	0.19	+1.4
1,720,640	+		BBR_RS17570	0.24	+0.2
1,720,674	+		BBR_RS17570	0.28	-0.3
1,720,680	+		BBR_RS17570	0.29	+0.5
1,720,682	-		BBR_RS17570	0.30	+1.5
1,720,682	-		BBR_RS17570	0.30	+1.0
1,720,688	-		BBR_RS17570	0.30	-0.2
1,720,712	-		BBR_RS17570	0.34	+1.1
1,720,714	-		BBR_RS17570	0.34	+0.1
1,720,740	+		BBR_RS17570	0.38	+2.0
1,720,774	+		BBR_RS17570	0.42	+0.6
1,720,793	+		BBR_RS17570	0.45	+0.4
1,720,817	+		BBR_RS17570	0.48	+0.4
1,720,843	+		BBR_RS17570	0.52	+1.1
1,720,849	+		BBR_RS17570	0.53	+0.1
1,720,856	+		BBR_RS17570	0.54	+0.3
1,720,858	-		BBR_RS17570	0.54	-0.2
1,720,858	-		BBR_RS17570	0.54	-0.8
1,720,872	-		BBR_RS17570	0.56	+1.6
1,720,897	+		BBR_RS17570	0.60	-3.0
1,720,905	-		BBR_RS17570	0.61	+0.7
1,720,907	+		BBR_RS17570	0.61	-0.3
1,720,907	+		BBR_RS17570	0.61	-1.7
1,720,915	-		BBR_RS17570	0.62	-2.2
1,720,933	+		BBR_RS17570	0.65	-0.8
1,720,957	+		BBR_RS17570	0.68	+0.5
1,720,957	+		BBR_RS17570	0.68	+0.8
1,720,957	+		BBR_RS17570	0.68	-0.0
1,720,957	+		BBR_RS17570	0.68	-1.1
1,720,965	-		BBR_RS17570	0.69	+2.0
1,720,965	-		BBR_RS17570	0.69	-2.0
1,721,001	-		BBR_RS17570	0.74	+0.0
1,721,011	-		BBR_RS17570	0.75	+1.6
1,721,021	-		BBR_RS17570	0.77	-1.9
1,721,050	+		BBR_RS17570	0.81	+0.5
1,721,055	-		BBR_RS17570	0.82	-2.1
1,721,086	-		BBR_RS17570	0.86	+1.1
1,721,092	+		BBR_RS17570	0.87	+2.8
1,721,100	-		BBR_RS17570	0.88	-1.2
1,721,149	-				+2.0
1,721,159	-				+1.0
1,721,162	-				-1.4
1,721,166	+				+1.4
1,721,226	+				+1.2
1,721,285	+				+1.1
1,721,292	+				-2.3
1,721,292	+				-0.5
1,721,297	+				+0.7
1,721,302	+				-0.2
1,721,302	+				+0.8
1,721,302	+				+0.2
1,721,305	-				+1.9
1,721,319	+				+2.1
1,721,325	-				-0.9
1,721,329	-				+0.5
1,721,329	-				+0.3
1,721,332	+				+0.3
1,721,332	+				-0.4
1,721,332	+				-0.5
1,721,332	+				-2.0
1,721,340	-				+0.2
1,721,340	-				+1.4