Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13765

Experiment: CDM1 without Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13760 and BBR_RS13765 are separated by 47 nucleotidesBBR_RS13765 and BBR_RS13770 are separated by 32 nucleotidesBBR_RS13770 and BBR_RS13775 are separated by 2 nucleotides BBR_RS13760: BBR_RS13760 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 859,973 to 861,196 _RS13760 BBR_RS13765: BBR_RS13765 - alpha/beta hydrolase, at 861,244 to 863,019 _RS13765 BBR_RS13770: BBR_RS13770 - DNA repair protein RecO, at 863,052 to 863,771 _RS13770 BBR_RS13775: BBR_RS13775 - isoprenyl transferase, at 863,774 to 864,562 _RS13775 Position (kb) 861 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 861.159 kb on + strandat 861.206 kb on + strandat 861.239 kb on - strandat 861.240 kb on - strandat 861.240 kb on - strandat 861.240 kb on - strandat 861.269 kb on - strandat 861.279 kb on - strandat 861.290 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.312 kb on + strandat 861.320 kb on - strandat 861.333 kb on + strandat 861.341 kb on - strandat 861.373 kb on + strandat 861.381 kb on - strandat 861.383 kb on + strandat 861.385 kb on + strandat 861.405 kb on - strandat 861.491 kb on + strand, within BBR_RS13765at 861.506 kb on + strand, within BBR_RS13765at 861.506 kb on - strand, within BBR_RS13765at 861.506 kb on - strand, within BBR_RS13765at 861.546 kb on - strand, within BBR_RS13765at 861.550 kb on - strand, within BBR_RS13765at 861.550 kb on - strand, within BBR_RS13765at 861.558 kb on - strand, within BBR_RS13765at 861.591 kb on + strand, within BBR_RS13765at 861.617 kb on - strand, within BBR_RS13765at 861.688 kb on - strand, within BBR_RS13765at 861.781 kb on + strand, within BBR_RS13765at 861.805 kb on - strand, within BBR_RS13765at 861.990 kb on - strand, within BBR_RS13765at 861.990 kb on - strand, within BBR_RS13765at 862.065 kb on - strand, within BBR_RS13765at 862.092 kb on + strand, within BBR_RS13765at 862.114 kb on + strand, within BBR_RS13765at 862.122 kb on - strand, within BBR_RS13765at 862.145 kb on - strand, within BBR_RS13765at 862.161 kb on + strand, within BBR_RS13765at 862.169 kb on - strand, within BBR_RS13765at 862.188 kb on - strand, within BBR_RS13765at 862.198 kb on - strand, within BBR_RS13765at 862.208 kb on + strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.242 kb on - strand, within BBR_RS13765at 862.249 kb on - strand, within BBR_RS13765at 862.322 kb on + strand, within BBR_RS13765at 862.373 kb on + strand, within BBR_RS13765at 862.378 kb on + strand, within BBR_RS13765at 862.381 kb on - strand, within BBR_RS13765at 862.383 kb on + strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.418 kb on - strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.468 kb on + strand, within BBR_RS13765at 862.474 kb on + strand, within BBR_RS13765at 862.497 kb on - strand, within BBR_RS13765at 862.507 kb on - strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.605 kb on - strand, within BBR_RS13765at 862.605 kb on - strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.645 kb on - strand, within BBR_RS13765at 862.802 kb on + strand, within BBR_RS13765at 862.805 kb on - strand, within BBR_RS13765at 862.810 kb on - strand, within BBR_RS13765at 862.810 kb on - strand, within BBR_RS13765at 862.826 kb on + strand, within BBR_RS13765at 862.847 kb on + strandat 862.853 kb on + strandat 862.853 kb on + strandat 862.874 kb on + strandat 862.899 kb on + strandat 862.925 kb on + strandat 862.925 kb on + strandat 862.945 kb on - strandat 862.947 kb on + strandat 862.947 kb on + strandat 862.947 kb on + strandat 862.955 kb on - strandat 862.978 kb on + strandat 863.010 kb on - strandat 863.043 kb on + strandat 863.060 kb on + strandat 863.117 kb on - strandat 863.147 kb on + strand, within BBR_RS13770at 863.167 kb on - strand, within BBR_RS13770at 863.360 kb on + strand, within BBR_RS13770at 863.373 kb on - strand, within BBR_RS13770at 863.434 kb on - strand, within BBR_RS13770at 863.492 kb on - strand, within BBR_RS13770at 863.616 kb on - strand, within BBR_RS13770at 863.616 kb on - strand, within BBR_RS13770at 863.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Adenine
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861,159 + +0.8
861,206 + +0.3
861,239 - -0.1
861,240 - -2.1
861,240 - +0.6
861,240 - -1.3
861,269 - +1.6
861,279 - -0.4
861,290 - -0.1
861,301 - +1.7
861,301 - -2.0
861,312 + -0.0
861,320 - +0.2
861,333 + +0.4
861,341 - +2.4
861,373 + +0.4
861,381 - -2.2
861,383 + -1.0
861,385 + +0.3
861,405 - -1.3
861,491 + BBR_RS13765 0.14 +0.0
861,506 + BBR_RS13765 0.15 -1.5
861,506 - BBR_RS13765 0.15 -1.3
861,506 - BBR_RS13765 0.15 +1.7
861,546 - BBR_RS13765 0.17 -0.8
861,550 - BBR_RS13765 0.17 -0.7
861,550 - BBR_RS13765 0.17 +1.3
861,558 - BBR_RS13765 0.18 -0.0
861,591 + BBR_RS13765 0.20 -2.5
861,617 - BBR_RS13765 0.21 -2.6
861,688 - BBR_RS13765 0.25 +2.5
861,781 + BBR_RS13765 0.30 +0.7
861,805 - BBR_RS13765 0.32 -0.1
861,990 - BBR_RS13765 0.42 +0.1
861,990 - BBR_RS13765 0.42 +1.3
862,065 - BBR_RS13765 0.46 +0.3
862,092 + BBR_RS13765 0.48 +1.3
862,114 + BBR_RS13765 0.49 -1.7
862,122 - BBR_RS13765 0.49 +0.4
862,145 - BBR_RS13765 0.51 +0.4
862,161 + BBR_RS13765 0.52 +1.6
862,169 - BBR_RS13765 0.52 +1.4
862,188 - BBR_RS13765 0.53 +1.1
862,198 - BBR_RS13765 0.54 -2.2
862,208 + BBR_RS13765 0.54 +1.3
862,235 - BBR_RS13765 0.56 -1.9
862,235 - BBR_RS13765 0.56 +1.9
862,235 - BBR_RS13765 0.56 -0.1
862,242 - BBR_RS13765 0.56 +1.0
862,249 - BBR_RS13765 0.57 -2.1
862,322 + BBR_RS13765 0.61 +1.5
862,373 + BBR_RS13765 0.64 +0.2
862,378 + BBR_RS13765 0.64 +1.1
862,381 - BBR_RS13765 0.64 +0.5
862,383 + BBR_RS13765 0.64 +1.3
862,386 - BBR_RS13765 0.64 +2.1
862,386 - BBR_RS13765 0.64 -0.7
862,386 - BBR_RS13765 0.64 +0.5
862,386 - BBR_RS13765 0.64 -1.3
862,418 - BBR_RS13765 0.66 -0.6
862,425 + BBR_RS13765 0.66 -0.4
862,425 + BBR_RS13765 0.66 +1.5
862,425 + BBR_RS13765 0.66 -0.8
862,468 + BBR_RS13765 0.69 -3.2
862,474 + BBR_RS13765 0.69 +1.3
862,497 - BBR_RS13765 0.71 -1.0
862,507 - BBR_RS13765 0.71 +0.4
862,597 + BBR_RS13765 0.76 +0.8
862,597 + BBR_RS13765 0.76 -0.8
862,597 + BBR_RS13765 0.76 -0.4
862,597 + BBR_RS13765 0.76 +1.9
862,605 - BBR_RS13765 0.77 -2.8
862,605 - BBR_RS13765 0.77 -0.2
862,637 + BBR_RS13765 0.78 +1.5
862,637 + BBR_RS13765 0.78 -1.7
862,637 + BBR_RS13765 0.78 -0.8
862,637 + BBR_RS13765 0.78 +0.5
862,637 + BBR_RS13765 0.78 +1.8
862,637 + BBR_RS13765 0.78 +1.9
862,637 + BBR_RS13765 0.78 -0.5
862,637 + BBR_RS13765 0.78 +1.2
862,645 - BBR_RS13765 0.79 +1.4
862,802 + BBR_RS13765 0.88 +1.9
862,805 - BBR_RS13765 0.88 +0.4
862,810 - BBR_RS13765 0.88 -0.2
862,810 - BBR_RS13765 0.88 +1.3
862,826 + BBR_RS13765 0.89 +1.0
862,847 + +0.1
862,853 + +0.0
862,853 + +1.8
862,874 + +3.4
862,899 + -1.5
862,925 + +0.2
862,925 + +0.1
862,945 - -0.2
862,947 + +2.0
862,947 + +0.5
862,947 + +2.0
862,955 - +0.9
862,978 + +2.0
863,010 - -1.9
863,043 + -0.3
863,060 + +1.8
863,117 - +0.1
863,147 + BBR_RS13770 0.13 +1.3
863,167 - BBR_RS13770 0.16 +1.3
863,360 + BBR_RS13770 0.43 -2.1
863,373 - BBR_RS13770 0.45 -2.0
863,434 - BBR_RS13770 0.53 -2.2
863,492 - BBR_RS13770 0.61 -0.4
863,616 - BBR_RS13770 0.78 -1.3
863,616 - BBR_RS13770 0.78 +0.3
863,722 + +0.2

Or see this region's nucleotide sequence