Experiment: CDM1 without Adenine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13650 and BBR_RS13655 are separated by 124 nucleotides BBR_RS13655 and BBR_RS13660 are separated by 207 nucleotides BBR_RS13660 and BBR_RS13665 overlap by 20 nucleotides BBR_RS13665 and BBR_RS13670 are separated by 166 nucleotides
BBR_RS13650: BBR_RS13650 - 3'-5' exonuclease, at 836,106 to 836,813
_RS13650
BBR_RS13655: BBR_RS13655 - hypothetical protein, at 836,938 to 837,369
_RS13655
BBR_RS13660: BBR_RS13660 - GTP-binding protein, at 837,577 to 839,763
_RS13660
BBR_RS13665: BBR_RS13665 - phospholipase/carboxylesterase, at 839,744 to 840,394
_RS13665
BBR_RS13670: BBR_RS13670 - hypothetical protein, at 840,561 to 841,793
_RS13670
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 836.639 kb on + strand, within BBR_RS13650 at 836.661 kb on - strand, within BBR_RS13650 at 836.710 kb on + strand, within BBR_RS13650 at 836.869 kb on - strand at 836.898 kb on + strand at 836.898 kb on + strand at 836.898 kb on + strand at 836.941 kb on + strand at 836.951 kb on - strand at 836.975 kb on - strand at 837.002 kb on - strand, within BBR_RS13655 at 837.045 kb on + strand, within BBR_RS13655 at 837.053 kb on - strand, within BBR_RS13655 at 837.053 kb on - strand, within BBR_RS13655 at 837.082 kb on + strand, within BBR_RS13655 at 837.110 kb on - strand, within BBR_RS13655 at 837.148 kb on - strand, within BBR_RS13655 at 837.167 kb on - strand, within BBR_RS13655 at 837.172 kb on - strand, within BBR_RS13655 at 837.200 kb on + strand, within BBR_RS13655 at 837.226 kb on + strand, within BBR_RS13655 at 837.226 kb on + strand, within BBR_RS13655 at 837.240 kb on - strand, within BBR_RS13655 at 837.242 kb on + strand, within BBR_RS13655 at 837.242 kb on + strand, within BBR_RS13655 at 837.242 kb on + strand, within BBR_RS13655 at 837.242 kb on + strand, within BBR_RS13655 at 837.247 kb on + strand, within BBR_RS13655 at 837.247 kb on + strand, within BBR_RS13655 at 837.260 kb on - strand, within BBR_RS13655 at 837.266 kb on + strand, within BBR_RS13655 at 837.271 kb on + strand, within BBR_RS13655 at 837.293 kb on + strand, within BBR_RS13655 at 837.293 kb on + strand, within BBR_RS13655 at 837.301 kb on - strand, within BBR_RS13655 at 837.302 kb on + strand, within BBR_RS13655 at 837.318 kb on - strand, within BBR_RS13655 at 837.325 kb on - strand, within BBR_RS13655 at 837.353 kb on - strand at 837.353 kb on - strand at 837.489 kb on + strand at 837.498 kb on - strand at 837.569 kb on + strand at 837.569 kb on + strand at 837.627 kb on - strand at 837.633 kb on + strand at 837.633 kb on + strand at 837.633 kb on + strand at 837.641 kb on - strand at 837.658 kb on + strand at 837.680 kb on + strand at 837.680 kb on + strand at 837.685 kb on + strand at 837.688 kb on - strand at 837.691 kb on + strand at 837.727 kb on + strand at 837.800 kb on + strand, within BBR_RS13660 at 837.897 kb on - strand, within BBR_RS13660 at 837.907 kb on + strand, within BBR_RS13660 at 837.994 kb on + strand, within BBR_RS13660 at 838.030 kb on + strand, within BBR_RS13660 at 838.041 kb on + strand, within BBR_RS13660 at 838.074 kb on + strand, within BBR_RS13660 at 838.079 kb on + strand, within BBR_RS13660 at 838.079 kb on + strand, within BBR_RS13660 at 838.087 kb on - strand, within BBR_RS13660 at 838.111 kb on + strand, within BBR_RS13660 at 838.117 kb on - strand, within BBR_RS13660 at 838.121 kb on - strand, within BBR_RS13660 at 838.136 kb on + strand, within BBR_RS13660 at 838.286 kb on + strand, within BBR_RS13660 at 838.294 kb on - strand, within BBR_RS13660 at 838.340 kb on + strand, within BBR_RS13660 at 838.340 kb on + strand, within BBR_RS13660 at 838.358 kb on + strand, within BBR_RS13660 at 838.374 kb on + strand, within BBR_RS13660 at 838.380 kb on + strand, within BBR_RS13660 at 838.382 kb on - strand, within BBR_RS13660 at 838.405 kb on + strand, within BBR_RS13660 at 838.453 kb on + strand, within BBR_RS13660 at 838.454 kb on + strand, within BBR_RS13660 at 838.464 kb on - strand, within BBR_RS13660 at 838.466 kb on - strand, within BBR_RS13660 at 838.501 kb on + strand, within BBR_RS13660 at 838.528 kb on + strand, within BBR_RS13660 at 838.599 kb on + strand, within BBR_RS13660 at 838.683 kb on + strand, within BBR_RS13660 at 838.712 kb on + strand, within BBR_RS13660 at 838.829 kb on + strand, within BBR_RS13660 at 838.829 kb on + strand, within BBR_RS13660 at 838.843 kb on + strand, within BBR_RS13660 at 838.863 kb on + strand, within BBR_RS13660 at 838.934 kb on + strand, within BBR_RS13660 at 838.934 kb on + strand, within BBR_RS13660 at 838.942 kb on - strand, within BBR_RS13660 at 839.001 kb on + strand, within BBR_RS13660 at 839.036 kb on + strand, within BBR_RS13660 at 839.065 kb on - strand, within BBR_RS13660 at 839.183 kb on + strand, within BBR_RS13660 at 839.183 kb on + strand, within BBR_RS13660 at 839.189 kb on + strand, within BBR_RS13660 at 839.268 kb on + strand, within BBR_RS13660 at 839.310 kb on - strand, within BBR_RS13660 at 839.328 kb on - strand, within BBR_RS13660 at 839.336 kb on - strand, within BBR_RS13660 at 839.341 kb on + strand, within BBR_RS13660 at 839.344 kb on - strand, within BBR_RS13660 at 839.384 kb on + strand, within BBR_RS13660 at 839.392 kb on - strand, within BBR_RS13660 at 839.474 kb on + strand, within BBR_RS13660 at 839.484 kb on + strand, within BBR_RS13660 at 839.484 kb on + strand, within BBR_RS13660 at 839.512 kb on - strand, within BBR_RS13660 at 839.590 kb on - strand at 839.605 kb on + strand at 839.649 kb on + strand at 839.649 kb on + strand at 839.684 kb on + strand at 839.692 kb on - strand at 839.705 kb on + strand at 839.714 kb on - strand at 839.714 kb on - strand at 839.816 kb on - strand, within BBR_RS13665 at 839.853 kb on + strand, within BBR_RS13665 at 839.877 kb on + strand, within BBR_RS13665 at 839.877 kb on + strand, within BBR_RS13665 at 839.898 kb on + strand, within BBR_RS13665 at 839.898 kb on + strand, within BBR_RS13665 at 839.939 kb on - strand, within BBR_RS13665 at 839.955 kb on + strand, within BBR_RS13665 at 839.974 kb on + strand, within BBR_RS13665 at 839.987 kb on - strand, within BBR_RS13665 at 839.997 kb on - strand, within BBR_RS13665 at 840.008 kb on + strand, within BBR_RS13665 at 840.008 kb on + strand, within BBR_RS13665 at 840.008 kb on + strand, within BBR_RS13665 at 840.008 kb on + strand, within BBR_RS13665 at 840.016 kb on - strand, within BBR_RS13665 at 840.021 kb on + strand, within BBR_RS13665 at 840.023 kb on + strand, within BBR_RS13665 at 840.046 kb on + strand, within BBR_RS13665 at 840.046 kb on + strand, within BBR_RS13665 at 840.054 kb on - strand, within BBR_RS13665 at 840.054 kb on - strand, within BBR_RS13665 at 840.054 kb on - strand, within BBR_RS13665 at 840.058 kb on + strand, within BBR_RS13665 at 840.071 kb on - strand, within BBR_RS13665 at 840.084 kb on + strand, within BBR_RS13665 at 840.287 kb on - strand, within BBR_RS13665 at 840.335 kb on + strand at 840.353 kb on - strand at 840.362 kb on + strand at 840.371 kb on + strand at 840.371 kb on + strand at 840.379 kb on - strand at 840.379 kb on - strand at 840.379 kb on - strand at 840.379 kb on - strand at 840.386 kb on + strand at 840.405 kb on - strand at 840.410 kb on - strand at 840.463 kb on - strand at 840.543 kb on + strand at 840.569 kb on + strand at 840.569 kb on + strand at 840.582 kb on - strand at 840.594 kb on + strand at 840.614 kb on + strand at 840.680 kb on + strand at 840.692 kb on - strand, within BBR_RS13670
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Adenine remove 836,639 + BBR_RS13650 0.75 +0.9 836,661 - BBR_RS13650 0.78 -0.7 836,710 + BBR_RS13650 0.85 +0.8 836,869 - +1.3 836,898 + -1.1 836,898 + -1.5 836,898 + -1.8 836,941 + +0.5 836,951 - +1.1 836,975 - -0.4 837,002 - BBR_RS13655 0.15 -1.0 837,045 + BBR_RS13655 0.25 +0.5 837,053 - BBR_RS13655 0.27 -3.7 837,053 - BBR_RS13655 0.27 +0.9 837,082 + BBR_RS13655 0.33 -0.1 837,110 - BBR_RS13655 0.40 -0.8 837,148 - BBR_RS13655 0.49 -1.6 837,167 - BBR_RS13655 0.53 -2.7 837,172 - BBR_RS13655 0.54 -0.7 837,200 + BBR_RS13655 0.61 -2.4 837,226 + BBR_RS13655 0.67 +0.3 837,226 + BBR_RS13655 0.67 +2.0 837,240 - BBR_RS13655 0.70 -2.5 837,242 + BBR_RS13655 0.70 -2.1 837,242 + BBR_RS13655 0.70 -1.2 837,242 + BBR_RS13655 0.70 -1.2 837,242 + BBR_RS13655 0.70 -1.9 837,247 + BBR_RS13655 0.72 -2.2 837,247 + BBR_RS13655 0.72 -2.2 837,260 - BBR_RS13655 0.75 -0.6 837,266 + BBR_RS13655 0.76 -0.2 837,271 + BBR_RS13655 0.77 -0.7 837,293 + BBR_RS13655 0.82 -0.2 837,293 + BBR_RS13655 0.82 +0.7 837,301 - BBR_RS13655 0.84 -2.4 837,302 + BBR_RS13655 0.84 -2.2 837,318 - BBR_RS13655 0.88 -1.3 837,325 - BBR_RS13655 0.90 -0.4 837,353 - +0.6 837,353 - -1.3 837,489 + -1.8 837,498 - -3.6 837,569 + +2.2 837,569 + -1.5 837,627 - -3.6 837,633 + -2.4 837,633 + -2.2 837,633 + +0.4 837,641 - -2.9 837,658 + -0.2 837,680 + -0.8 837,680 + +0.6 837,685 + -2.9 837,688 - -2.5 837,691 + -2.7 837,727 + -1.0 837,800 + BBR_RS13660 0.10 -0.6 837,897 - BBR_RS13660 0.15 -0.9 837,907 + BBR_RS13660 0.15 -2.5 837,994 + BBR_RS13660 0.19 +0.7 838,030 + BBR_RS13660 0.21 -2.4 838,041 + BBR_RS13660 0.21 -0.4 838,074 + BBR_RS13660 0.23 +1.1 838,079 + BBR_RS13660 0.23 -0.3 838,079 + BBR_RS13660 0.23 -2.4 838,087 - BBR_RS13660 0.23 -0.6 838,111 + BBR_RS13660 0.24 +0.5 838,117 - BBR_RS13660 0.25 -2.9 838,121 - BBR_RS13660 0.25 -1.0 838,136 + BBR_RS13660 0.26 -1.5 838,286 + BBR_RS13660 0.32 +0.3 838,294 - BBR_RS13660 0.33 -1.4 838,340 + BBR_RS13660 0.35 +1.2 838,340 + BBR_RS13660 0.35 -1.3 838,358 + BBR_RS13660 0.36 +0.7 838,374 + BBR_RS13660 0.36 +0.7 838,380 + BBR_RS13660 0.37 +0.9 838,382 - BBR_RS13660 0.37 -2.2 838,405 + BBR_RS13660 0.38 +0.6 838,453 + BBR_RS13660 0.40 -0.8 838,454 + BBR_RS13660 0.40 +0.0 838,464 - BBR_RS13660 0.41 -2.7 838,466 - BBR_RS13660 0.41 -1.7 838,501 + BBR_RS13660 0.42 -0.7 838,528 + BBR_RS13660 0.43 -3.2 838,599 + BBR_RS13660 0.47 -2.0 838,683 + BBR_RS13660 0.51 +0.6 838,712 + BBR_RS13660 0.52 +2.2 838,829 + BBR_RS13660 0.57 +1.0 838,829 + BBR_RS13660 0.57 -0.3 838,843 + BBR_RS13660 0.58 -2.5 838,863 + BBR_RS13660 0.59 -0.0 838,934 + BBR_RS13660 0.62 -1.8 838,934 + BBR_RS13660 0.62 +1.5 838,942 - BBR_RS13660 0.62 -0.4 839,001 + BBR_RS13660 0.65 -1.3 839,036 + BBR_RS13660 0.67 +0.4 839,065 - BBR_RS13660 0.68 +0.7 839,183 + BBR_RS13660 0.73 +2.5 839,183 + BBR_RS13660 0.73 +0.1 839,189 + BBR_RS13660 0.74 -1.9 839,268 + BBR_RS13660 0.77 +1.0 839,310 - BBR_RS13660 0.79 +1.0 839,328 - BBR_RS13660 0.80 -0.5 839,336 - BBR_RS13660 0.80 -0.2 839,341 + BBR_RS13660 0.81 -0.9 839,344 - BBR_RS13660 0.81 -0.9 839,384 + BBR_RS13660 0.83 +0.8 839,392 - BBR_RS13660 0.83 +1.1 839,474 + BBR_RS13660 0.87 +0.5 839,484 + BBR_RS13660 0.87 +0.1 839,484 + BBR_RS13660 0.87 +0.2 839,512 - BBR_RS13660 0.88 +0.7 839,590 - -2.9 839,605 + -0.5 839,649 + -2.0 839,649 + -1.0 839,684 + -3.6 839,692 - -0.2 839,705 + +0.9 839,714 - +1.1 839,714 - +0.2 839,816 - BBR_RS13665 0.11 -1.2 839,853 + BBR_RS13665 0.17 +0.5 839,877 + BBR_RS13665 0.20 -0.5 839,877 + BBR_RS13665 0.20 -2.6 839,898 + BBR_RS13665 0.24 -2.6 839,898 + BBR_RS13665 0.24 -0.0 839,939 - BBR_RS13665 0.30 +0.6 839,955 + BBR_RS13665 0.32 +0.9 839,974 + BBR_RS13665 0.35 -2.6 839,987 - BBR_RS13665 0.37 -0.3 839,997 - BBR_RS13665 0.39 +1.4 840,008 + BBR_RS13665 0.41 -1.0 840,008 + BBR_RS13665 0.41 +0.3 840,008 + BBR_RS13665 0.41 +0.3 840,008 + BBR_RS13665 0.41 +1.1 840,016 - BBR_RS13665 0.42 -0.9 840,021 + BBR_RS13665 0.43 +1.5 840,023 + BBR_RS13665 0.43 -0.3 840,046 + BBR_RS13665 0.46 -0.3 840,046 + BBR_RS13665 0.46 +0.9 840,054 - BBR_RS13665 0.48 -0.8 840,054 - BBR_RS13665 0.48 -0.8 840,054 - BBR_RS13665 0.48 +1.4 840,058 + BBR_RS13665 0.48 +1.9 840,071 - BBR_RS13665 0.50 +0.4 840,084 + BBR_RS13665 0.52 -0.3 840,287 - BBR_RS13665 0.83 +0.9 840,335 + -2.0 840,353 - -0.6 840,362 + -0.3 840,371 + +0.9 840,371 + -0.6 840,379 - +0.4 840,379 - -0.0 840,379 - +0.6 840,379 - -1.4 840,386 + +0.9 840,405 - +1.8 840,410 - +0.3 840,463 - +0.4 840,543 + -2.9 840,569 + +0.7 840,569 + -1.5 840,582 - -1.3 840,594 + -2.2 840,614 + +0.7 840,680 + +0.5 840,692 - BBR_RS13670 0.11 -0.5
Or see this region's nucleotide sequence