Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12365

Experiment: CDM1 without Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12355 and BBR_RS12360 are separated by 170 nucleotidesBBR_RS12360 and BBR_RS12365 are separated by 89 nucleotidesBBR_RS12365 and BBR_RS12370 are separated by 115 nucleotidesBBR_RS12370 and BBR_RS12375 are separated by 5 nucleotides BBR_RS12355: BBR_RS12355 - ribonuclease III, at 524,160 to 524,903 _RS12355 BBR_RS12360: BBR_RS12360 - 50S ribosomal protein L32, at 525,074 to 525,268 _RS12360 BBR_RS12365: BBR_RS12365 - DUF177 domain-containing protein, at 525,358 to 525,978 _RS12365 BBR_RS12370: BBR_RS12370 - cell division protein, at 526,094 to 526,879 _RS12370 BBR_RS12375: BBR_RS12375 - pantetheine-phosphate adenylyltransferase, at 526,885 to 527,385 _RS12375 Position (kb) 525 526Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 524.465 kb on + strand, within BBR_RS12355at 524.468 kb on - strand, within BBR_RS12355at 524.552 kb on - strand, within BBR_RS12355at 524.554 kb on + strand, within BBR_RS12355at 524.621 kb on - strand, within BBR_RS12355at 524.654 kb on - strand, within BBR_RS12355at 524.701 kb on - strand, within BBR_RS12355at 524.789 kb on + strand, within BBR_RS12355at 524.810 kb on + strand, within BBR_RS12355at 524.836 kb on + strandat 524.838 kb on + strandat 524.932 kb on - strandat 524.936 kb on + strandat 524.943 kb on + strandat 524.944 kb on - strandat 524.944 kb on - strandat 524.948 kb on + strandat 524.948 kb on + strandat 524.963 kb on - strandat 524.973 kb on - strandat 524.975 kb on - strandat 524.977 kb on + strandat 524.982 kb on - strandat 524.983 kb on + strandat 525.379 kb on + strandat 525.382 kb on - strandat 525.388 kb on - strandat 525.394 kb on - strandat 525.456 kb on + strand, within BBR_RS12365at 525.456 kb on + strand, within BBR_RS12365at 525.458 kb on - strand, within BBR_RS12365at 525.461 kb on + strand, within BBR_RS12365at 525.464 kb on - strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.476 kb on - strand, within BBR_RS12365at 525.478 kb on - strand, within BBR_RS12365at 525.480 kb on + strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.502 kb on - strand, within BBR_RS12365at 525.528 kb on - strand, within BBR_RS12365at 525.529 kb on - strand, within BBR_RS12365at 525.533 kb on - strand, within BBR_RS12365at 525.602 kb on - strand, within BBR_RS12365at 525.612 kb on - strand, within BBR_RS12365at 525.662 kb on + strand, within BBR_RS12365at 525.667 kb on + strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.676 kb on - strand, within BBR_RS12365at 525.716 kb on + strand, within BBR_RS12365at 525.721 kb on + strand, within BBR_RS12365at 525.735 kb on + strand, within BBR_RS12365at 525.743 kb on - strand, within BBR_RS12365at 525.844 kb on - strand, within BBR_RS12365at 525.850 kb on - strand, within BBR_RS12365at 525.854 kb on - strand, within BBR_RS12365at 525.862 kb on - strand, within BBR_RS12365at 525.890 kb on - strand, within BBR_RS12365at 525.896 kb on + strand, within BBR_RS12365at 525.905 kb on + strand, within BBR_RS12365at 525.939 kb on - strandat 526.027 kb on - strandat 526.034 kb on + strandat 526.065 kb on + strandat 526.070 kb on + strandat 526.073 kb on - strandat 526.073 kb on - strandat 526.078 kb on - strandat 526.078 kb on - strandat 526.082 kb on + strandat 526.082 kb on + strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.110 kb on - strandat 526.131 kb on + strandat 526.733 kb on - strand, within BBR_RS12370at 526.891 kb on - strandat 526.896 kb on - strandat 526.898 kb on + strandat 526.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Adenine
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524,465 + BBR_RS12355 0.41 -1.4
524,468 - BBR_RS12355 0.41 -0.3
524,552 - BBR_RS12355 0.53 -1.4
524,554 + BBR_RS12355 0.53 +2.7
524,621 - BBR_RS12355 0.62 +0.9
524,654 - BBR_RS12355 0.66 -0.7
524,701 - BBR_RS12355 0.73 +0.7
524,789 + BBR_RS12355 0.85 -1.6
524,810 + BBR_RS12355 0.87 -2.0
524,836 + +1.0
524,838 + -0.8
524,932 - +0.4
524,936 + +0.1
524,943 + -2.7
524,944 - -0.7
524,944 - -1.4
524,948 + -0.8
524,948 + -0.2
524,963 - +0.7
524,973 - -2.0
524,975 - -0.4
524,977 + +0.1
524,982 - +0.8
524,983 + -2.4
525,379 + -3.2
525,382 - -0.5
525,388 - +1.2
525,394 - +1.2
525,456 + BBR_RS12365 0.16 -2.9
525,456 + BBR_RS12365 0.16 -3.1
525,458 - BBR_RS12365 0.16 -2.1
525,461 + BBR_RS12365 0.17 -2.0
525,464 - BBR_RS12365 0.17 +0.1
525,475 + BBR_RS12365 0.19 -1.5
525,475 + BBR_RS12365 0.19 -2.8
525,476 - BBR_RS12365 0.19 -1.0
525,478 - BBR_RS12365 0.19 -2.8
525,480 + BBR_RS12365 0.20 -2.0
525,488 - BBR_RS12365 0.21 +0.7
525,488 - BBR_RS12365 0.21 -1.0
525,502 - BBR_RS12365 0.23 +0.2
525,528 - BBR_RS12365 0.27 -2.2
525,529 - BBR_RS12365 0.28 -2.2
525,533 - BBR_RS12365 0.28 -2.8
525,602 - BBR_RS12365 0.39 -3.0
525,612 - BBR_RS12365 0.41 -2.2
525,662 + BBR_RS12365 0.49 -3.3
525,667 + BBR_RS12365 0.50 -3.1
525,675 - BBR_RS12365 0.51 -1.7
525,675 - BBR_RS12365 0.51 -0.3
525,676 - BBR_RS12365 0.51 -2.5
525,716 + BBR_RS12365 0.58 -1.3
525,721 + BBR_RS12365 0.58 -2.0
525,735 + BBR_RS12365 0.61 -2.0
525,743 - BBR_RS12365 0.62 -2.6
525,844 - BBR_RS12365 0.78 -2.7
525,850 - BBR_RS12365 0.79 -2.4
525,854 - BBR_RS12365 0.80 -3.1
525,862 - BBR_RS12365 0.81 -3.9
525,890 - BBR_RS12365 0.86 -0.4
525,896 + BBR_RS12365 0.87 -2.1
525,905 + BBR_RS12365 0.88 -2.9
525,939 - -0.7
526,027 - -2.0
526,034 + +0.4
526,065 + +0.7
526,070 + +0.2
526,073 - -0.0
526,073 - +1.6
526,078 - +0.2
526,078 - +0.2
526,082 + +0.4
526,082 + -0.3
526,090 - +1.5
526,090 - +0.2
526,090 - +2.0
526,110 - +1.8
526,131 + -3.1
526,733 - BBR_RS12370 0.81 -1.5
526,891 - -4.9
526,896 - -0.1
526,898 + +0.8
526,916 + -0.9

Or see this region's nucleotide sequence