Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27215

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27210 and AO356_27215 are separated by 2 nucleotidesAO356_27215 and AO356_27220 are separated by 18 nucleotides AO356_27210: AO356_27210 - hypothetical protein, at 6,200,759 to 6,203,113 _27210 AO356_27215: AO356_27215 - hypothetical protein, at 6,203,116 to 6,203,802 _27215 AO356_27220: AO356_27220 - hypothetical protein, at 6,203,821 to 6,204,951 _27220 Position (kb) 6203 6204Strain fitness (log2 ratio) -1 0 1at 6202.336 kb on + strand, within AO356_27210at 6202.336 kb on + strand, within AO356_27210at 6202.392 kb on + strand, within AO356_27210at 6202.392 kb on + strand, within AO356_27210at 6202.392 kb on + strand, within AO356_27210at 6202.478 kb on + strand, within AO356_27210at 6202.478 kb on + strand, within AO356_27210at 6202.479 kb on - strand, within AO356_27210at 6202.567 kb on - strand, within AO356_27210at 6202.596 kb on + strand, within AO356_27210at 6202.702 kb on + strand, within AO356_27210at 6203.011 kb on - strandat 6203.322 kb on + strand, within AO356_27215at 6203.417 kb on + strand, within AO356_27215at 6203.675 kb on - strand, within AO356_27215at 6203.707 kb on + strand, within AO356_27215at 6203.708 kb on - strand, within AO356_27215at 6203.734 kb on + strandat 6203.759 kb on + strandat 6203.809 kb on + strandat 6203.810 kb on - strandat 6203.840 kb on - strandat 6203.890 kb on - strandat 6203.904 kb on - strandat 6204.034 kb on - strand, within AO356_27220at 6204.076 kb on + strand, within AO356_27220at 6204.077 kb on - strand, within AO356_27220at 6204.269 kb on + strand, within AO356_27220at 6204.269 kb on + strand, within AO356_27220at 6204.270 kb on - strand, within AO356_27220at 6204.340 kb on - strand, within AO356_27220at 6204.374 kb on - strand, within AO356_27220at 6204.410 kb on + strand, within AO356_27220at 6204.501 kb on - strand, within AO356_27220at 6204.501 kb on - strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.573 kb on - strand, within AO356_27220at 6204.573 kb on - strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.729 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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6,202,336 + AO356_27210 0.67 -0.8
6,202,336 + AO356_27210 0.67 -0.7
6,202,392 + AO356_27210 0.69 -0.4
6,202,392 + AO356_27210 0.69 +0.2
6,202,392 + AO356_27210 0.69 -1.0
6,202,478 + AO356_27210 0.73 -0.1
6,202,478 + AO356_27210 0.73 -0.2
6,202,479 - AO356_27210 0.73 -0.8
6,202,567 - AO356_27210 0.77 -1.3
6,202,596 + AO356_27210 0.78 +0.0
6,202,702 + AO356_27210 0.83 +0.2
6,203,011 - -1.2
6,203,322 + AO356_27215 0.30 -0.6
6,203,417 + AO356_27215 0.44 -1.6
6,203,675 - AO356_27215 0.81 -0.9
6,203,707 + AO356_27215 0.86 -0.3
6,203,708 - AO356_27215 0.86 -0.1
6,203,734 + -0.2
6,203,759 + +0.0
6,203,809 + -0.2
6,203,810 - +0.8
6,203,840 - +0.1
6,203,890 - -0.5
6,203,904 - +0.3
6,204,034 - AO356_27220 0.19 +0.1
6,204,076 + AO356_27220 0.23 +0.4
6,204,077 - AO356_27220 0.23 +0.1
6,204,269 + AO356_27220 0.40 -0.1
6,204,269 + AO356_27220 0.40 +0.0
6,204,270 - AO356_27220 0.40 +0.2
6,204,340 - AO356_27220 0.46 -0.3
6,204,374 - AO356_27220 0.49 +0.5
6,204,410 + AO356_27220 0.52 -0.2
6,204,501 - AO356_27220 0.60 +0.0
6,204,501 - AO356_27220 0.60 +0.6
6,204,570 + AO356_27220 0.66 -0.0
6,204,570 + AO356_27220 0.66 +0.1
6,204,570 + AO356_27220 0.66 -0.9
6,204,573 - AO356_27220 0.66 +0.3
6,204,573 - AO356_27220 0.66 +0.1
6,204,578 + AO356_27220 0.67 +0.1
6,204,578 + AO356_27220 0.67 +0.0
6,204,578 + AO356_27220 0.67 -0.1
6,204,716 + AO356_27220 0.79 +0.3
6,204,716 + AO356_27220 0.79 +0.0
6,204,716 + AO356_27220 0.79 +0.0
6,204,729 + AO356_27220 0.80 +0.9
6,204,733 + AO356_27220 0.81 +0.1
6,204,733 + AO356_27220 0.81 -0.0
6,204,733 + AO356_27220 0.81 -0.6
6,204,734 - AO356_27220 0.81 +0.8
6,204,734 - AO356_27220 0.81 +1.0
6,204,734 - AO356_27220 0.81 +1.1

Or see this region's nucleotide sequence