Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19160

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19150 and AO356_19155 overlap by 8 nucleotidesAO356_19155 and AO356_19160 overlap by 4 nucleotidesAO356_19160 and AO356_19165 are separated by 151 nucleotidesAO356_19165 and AO356_19170 overlap by 4 nucleotides AO356_19150: AO356_19150 - cobalamin biosynthesis protein CobD, at 4,300,442 to 4,301,350 _19150 AO356_19155: AO356_19155 - threonine-phosphate decarboxylase, at 4,301,343 to 4,302,335 _19155 AO356_19160: AO356_19160 - cobyric acid synthase, at 4,302,332 to 4,303,783 _19160 AO356_19165: AO356_19165 - adenosylcobinamide kinase, at 4,303,935 to 4,304,456 _19165 AO356_19170: AO356_19170 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,304,453 to 4,305,508 _19170 Position (kb) 4302 4303 4304Strain fitness (log2 ratio) -3 -2 -1 0 1at 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.524 kb on - strand, within AO356_19155at 4301.526 kb on + strand, within AO356_19155at 4301.526 kb on + strand, within AO356_19155at 4301.527 kb on - strand, within AO356_19155at 4301.527 kb on - strand, within AO356_19155at 4301.527 kb on - strand, within AO356_19155at 4301.664 kb on + strand, within AO356_19155at 4301.664 kb on + strand, within AO356_19155at 4301.665 kb on - strand, within AO356_19155at 4301.665 kb on - strand, within AO356_19155at 4301.665 kb on - strand, within AO356_19155at 4301.665 kb on - strand, within AO356_19155at 4301.665 kb on - strand, within AO356_19155at 4301.666 kb on + strand, within AO356_19155at 4301.667 kb on - strand, within AO356_19155at 4301.667 kb on - strand, within AO356_19155at 4301.874 kb on + strand, within AO356_19155at 4301.874 kb on + strand, within AO356_19155at 4301.875 kb on - strand, within AO356_19155at 4301.953 kb on + strand, within AO356_19155at 4301.953 kb on + strand, within AO356_19155at 4301.953 kb on + strand, within AO356_19155at 4301.953 kb on + strand, within AO356_19155at 4301.953 kb on + strand, within AO356_19155at 4301.954 kb on - strand, within AO356_19155at 4301.954 kb on - strand, within AO356_19155at 4301.954 kb on - strand, within AO356_19155at 4302.379 kb on + strandat 4302.638 kb on + strand, within AO356_19160at 4302.638 kb on + strand, within AO356_19160at 4302.638 kb on + strand, within AO356_19160at 4302.639 kb on - strand, within AO356_19160at 4302.647 kb on + strand, within AO356_19160at 4302.647 kb on + strand, within AO356_19160at 4302.647 kb on + strand, within AO356_19160at 4302.647 kb on + strand, within AO356_19160at 4302.647 kb on + strand, within AO356_19160at 4302.648 kb on - strand, within AO356_19160at 4302.704 kb on + strand, within AO356_19160at 4302.704 kb on + strand, within AO356_19160at 4302.705 kb on - strand, within AO356_19160at 4302.705 kb on - strand, within AO356_19160at 4302.705 kb on - strand, within AO356_19160at 4303.004 kb on + strand, within AO356_19160at 4303.005 kb on - strand, within AO356_19160at 4303.245 kb on - strand, within AO356_19160at 4303.293 kb on - strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.605 kb on - strand, within AO356_19160at 4303.688 kb on + strandat 4303.781 kb on + strandat 4303.782 kb on - strandat 4303.782 kb on - strandat 4303.851 kb on + strandat 4303.851 kb on + strandat 4303.851 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.856 kb on - strandat 4303.856 kb on - strandat 4303.856 kb on - strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.971 kb on - strandat 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.445 kb on - strandat 4304.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,301,342 + -0.4
4,301,342 + -1.2
4,301,342 + -0.3
4,301,342 + +0.2
4,301,342 + -0.8
4,301,342 + -0.4
4,301,342 + +0.2
4,301,342 + +0.3
4,301,342 + +0.8
4,301,343 - -0.8
4,301,343 - -0.2
4,301,343 - +0.4
4,301,343 - -1.8
4,301,343 - -0.9
4,301,343 - -0.3
4,301,524 - AO356_19155 0.18 -1.6
4,301,526 + AO356_19155 0.18 -1.3
4,301,526 + AO356_19155 0.18 -0.7
4,301,527 - AO356_19155 0.19 -3.3
4,301,527 - AO356_19155 0.19 -0.8
4,301,527 - AO356_19155 0.19 -0.6
4,301,664 + AO356_19155 0.32 -0.2
4,301,664 + AO356_19155 0.32 -0.1
4,301,665 - AO356_19155 0.32 -0.6
4,301,665 - AO356_19155 0.32 -0.9
4,301,665 - AO356_19155 0.32 -0.5
4,301,665 - AO356_19155 0.32 -0.2
4,301,665 - AO356_19155 0.32 -0.6
4,301,666 + AO356_19155 0.33 -0.2
4,301,667 - AO356_19155 0.33 +0.3
4,301,667 - AO356_19155 0.33 -1.2
4,301,874 + AO356_19155 0.53 +0.1
4,301,874 + AO356_19155 0.53 -0.7
4,301,875 - AO356_19155 0.54 -0.6
4,301,953 + AO356_19155 0.61 -0.7
4,301,953 + AO356_19155 0.61 -0.2
4,301,953 + AO356_19155 0.61 -1.1
4,301,953 + AO356_19155 0.61 -0.7
4,301,953 + AO356_19155 0.61 +0.0
4,301,954 - AO356_19155 0.62 -1.6
4,301,954 - AO356_19155 0.62 +0.8
4,301,954 - AO356_19155 0.62 +0.6
4,302,379 + +0.0
4,302,638 + AO356_19160 0.21 -0.2
4,302,638 + AO356_19160 0.21 -0.2
4,302,638 + AO356_19160 0.21 -0.8
4,302,639 - AO356_19160 0.21 -1.2
4,302,647 + AO356_19160 0.22 +0.5
4,302,647 + AO356_19160 0.22 -1.0
4,302,647 + AO356_19160 0.22 -0.6
4,302,647 + AO356_19160 0.22 -2.8
4,302,647 + AO356_19160 0.22 -1.7
4,302,648 - AO356_19160 0.22 -1.0
4,302,704 + AO356_19160 0.26 -0.5
4,302,704 + AO356_19160 0.26 +0.2
4,302,705 - AO356_19160 0.26 -0.8
4,302,705 - AO356_19160 0.26 +0.6
4,302,705 - AO356_19160 0.26 -1.8
4,303,004 + AO356_19160 0.46 +0.0
4,303,005 - AO356_19160 0.46 +0.4
4,303,245 - AO356_19160 0.63 -0.9
4,303,293 - AO356_19160 0.66 -1.2
4,303,604 + AO356_19160 0.88 -0.7
4,303,604 + AO356_19160 0.88 +0.4
4,303,604 + AO356_19160 0.88 -1.4
4,303,604 + AO356_19160 0.88 -0.2
4,303,604 + AO356_19160 0.88 -0.6
4,303,605 - AO356_19160 0.88 -1.1
4,303,688 + +0.0
4,303,781 + -0.2
4,303,782 - +0.9
4,303,782 - -1.8
4,303,851 + -0.6
4,303,851 + +0.3
4,303,851 + -0.5
4,303,855 + +0.1
4,303,855 + +0.6
4,303,855 + +1.0
4,303,855 + +0.5
4,303,855 + +0.3
4,303,856 - -0.8
4,303,856 - -0.2
4,303,856 - +0.0
4,303,919 + -0.1
4,303,919 + -0.5
4,303,919 + +0.5
4,303,919 + +0.0
4,303,971 - -0.6
4,304,022 + AO356_19165 0.17 +0.0
4,304,022 + AO356_19165 0.17 -0.6
4,304,022 + AO356_19165 0.17 -1.2
4,304,022 + AO356_19165 0.17 -0.4
4,304,022 + AO356_19165 0.17 -0.3
4,304,023 - AO356_19165 0.17 +0.4
4,304,023 - AO356_19165 0.17 -0.1
4,304,023 - AO356_19165 0.17 -1.2
4,304,445 - -0.9
4,304,445 - -1.4

Or see this region's nucleotide sequence