Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12735

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_12725 and AO356_12730 are separated by 2 nucleotidesAO356_12730 and AO356_12735 are separated by 13 nucleotidesAO356_12735 and AO356_12740 are separated by 4 nucleotides AO356_12725: AO356_12725 - recombinase XerC, at 2,900,804 to 2,901,703 _12725 AO356_12730: AO356_12730 - hypothetical protein, at 2,901,706 to 2,902,428 _12730 AO356_12735: AO356_12735 - diaminopimelate epimerase, at 2,902,442 to 2,903,272 _12735 AO356_12740: AO356_12740 - diaminopimelate decarboxylase, at 2,903,277 to 2,904,524 _12740 Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -2 -1 0 1at 2901.456 kb on + strand, within AO356_12725at 2901.456 kb on + strand, within AO356_12725at 2901.456 kb on + strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.605 kb on + strand, within AO356_12725at 2901.628 kb on - strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.803 kb on + strand, within AO356_12730at 2901.804 kb on - strand, within AO356_12730at 2901.804 kb on - strand, within AO356_12730at 2901.835 kb on + strand, within AO356_12730at 2901.835 kb on + strand, within AO356_12730at 2901.836 kb on - strand, within AO356_12730at 2902.349 kb on + strand, within AO356_12730at 2902.350 kb on - strand, within AO356_12730at 2902.464 kb on + strandat 2902.464 kb on + strandat 2902.465 kb on - strandat 2902.466 kb on + strandat 2902.466 kb on + strandat 2902.467 kb on - strandat 2902.467 kb on - strandat 2902.852 kb on - strand, within AO356_12735at 2902.852 kb on - strand, within AO356_12735at 2903.258 kb on - strandat 2903.279 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
2,901,456 + AO356_12725 0.72 -1.1
2,901,456 + AO356_12725 0.72 -1.9
2,901,456 + AO356_12725 0.72 -1.4
2,901,457 - AO356_12725 0.73 -1.6
2,901,457 - AO356_12725 0.73 -1.0
2,901,457 - AO356_12725 0.73 -1.4
2,901,457 - AO356_12725 0.73 +0.1
2,901,457 - AO356_12725 0.73 -1.4
2,901,463 - AO356_12725 0.73 -0.1
2,901,463 - AO356_12725 0.73 -1.2
2,901,463 - AO356_12725 0.73 +0.2
2,901,605 + AO356_12725 0.89 -0.7
2,901,628 - -2.5
2,901,770 + -0.5
2,901,770 + -0.2
2,901,770 + +0.5
2,901,770 + -0.7
2,901,771 - -0.1
2,901,771 - -1.2
2,901,771 - -2.1
2,901,771 - -0.4
2,901,803 + AO356_12730 0.13 -0.7
2,901,804 - AO356_12730 0.14 +0.1
2,901,804 - AO356_12730 0.14 -0.9
2,901,835 + AO356_12730 0.18 -0.8
2,901,835 + AO356_12730 0.18 +0.8
2,901,836 - AO356_12730 0.18 +0.1
2,902,349 + AO356_12730 0.89 -1.2
2,902,350 - AO356_12730 0.89 -0.6
2,902,464 + -0.1
2,902,464 + -0.2
2,902,465 - +0.2
2,902,466 + -2.4
2,902,466 + +0.2
2,902,467 - +0.2
2,902,467 - -1.4
2,902,852 - AO356_12735 0.49 -1.1
2,902,852 - AO356_12735 0.49 -0.7
2,903,258 - -0.1
2,903,279 - -0.1

Or see this region's nucleotide sequence