Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09730

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_09725 and AO356_09730 overlap by 4 nucleotidesAO356_09730 and AO356_09735 are separated by 85 nucleotidesAO356_09735 and AO356_09740 overlap by 4 nucleotides AO356_09725: AO356_09725 - histidine kinase, at 2,207,340 to 2,208,425 _09725 AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858 _09730 AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780 _09735 AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079 _09740 Position (kb) 2208 2209 2210Strain fitness (log2 ratio) -2 -1 0 1at 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.427 kb on + strandat 2207.428 kb on - strandat 2207.428 kb on - strandat 2207.428 kb on - strandat 2207.619 kb on + strand, within AO356_09725at 2207.620 kb on - strand, within AO356_09725at 2207.791 kb on + strand, within AO356_09725at 2207.792 kb on - strand, within AO356_09725at 2207.792 kb on - strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.847 kb on + strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2207.848 kb on - strand, within AO356_09725at 2208.019 kb on - strand, within AO356_09725at 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.466 kb on + strandat 2208.704 kb on + strand, within AO356_09730at 2208.705 kb on - strand, within AO356_09730at 2208.725 kb on + strand, within AO356_09730at 2209.225 kb on + strand, within AO356_09730at 2209.225 kb on + strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730at 2209.463 kb on + strand, within AO356_09730at 2209.463 kb on + strand, within AO356_09730at 2209.464 kb on - strand, within AO356_09730at 2209.783 kb on + strandat 2209.783 kb on + strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.867 kb on + strandat 2209.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
2,207,427 + -0.9
2,207,427 + -1.2
2,207,427 + -1.4
2,207,427 + +0.9
2,207,428 - -2.1
2,207,428 - -1.8
2,207,428 - -0.9
2,207,619 + AO356_09725 0.26 -0.2
2,207,620 - AO356_09725 0.26 -0.5
2,207,791 + AO356_09725 0.42 -0.6
2,207,792 - AO356_09725 0.42 -1.2
2,207,792 - AO356_09725 0.42 -1.6
2,207,847 + AO356_09725 0.47 -0.5
2,207,847 + AO356_09725 0.47 -0.6
2,207,847 + AO356_09725 0.47 -0.6
2,207,847 + AO356_09725 0.47 -0.2
2,207,848 - AO356_09725 0.47 +0.8
2,207,848 - AO356_09725 0.47 -0.4
2,207,848 - AO356_09725 0.47 -2.4
2,208,019 - AO356_09725 0.63 -2.3
2,208,466 + -2.4
2,208,466 + -0.6
2,208,466 + -0.1
2,208,466 + +0.6
2,208,704 + AO356_09730 0.20 -0.1
2,208,705 - AO356_09730 0.20 -0.9
2,208,725 + AO356_09730 0.21 -0.8
2,209,225 + AO356_09730 0.56 +0.2
2,209,225 + AO356_09730 0.56 -0.7
2,209,226 - AO356_09730 0.56 -0.9
2,209,226 - AO356_09730 0.56 -0.8
2,209,226 - AO356_09730 0.56 -0.9
2,209,345 + AO356_09730 0.64 -1.4
2,209,345 + AO356_09730 0.64 +0.7
2,209,463 + AO356_09730 0.72 -1.1
2,209,463 + AO356_09730 0.72 -0.5
2,209,464 - AO356_09730 0.73 -1.1
2,209,783 + -0.0
2,209,783 + -0.5
2,209,784 - -1.3
2,209,784 - -2.1
2,209,784 - +0.1
2,209,784 - +0.3
2,209,784 - -0.2
2,209,867 + +0.2
2,209,921 - -0.2

Or see this region's nucleotide sequence