Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08735

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08730 and AO356_08735 are separated by 168 nucleotidesAO356_08735 and AO356_08740 are separated by 133 nucleotides AO356_08730: AO356_08730 - molecular chaperone, at 1,964,682 to 1,966,442 _08730 AO356_08735: AO356_08735 - phosphoserine phosphatase, at 1,966,611 to 1,967,825 _08735 AO356_08740: AO356_08740 - histidine kinase, at 1,967,959 to 1,969,476 _08740 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1965.705 kb on + strand, within AO356_08730at 1965.705 kb on + strand, within AO356_08730at 1965.705 kb on + strand, within AO356_08730at 1965.705 kb on + strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.706 kb on - strand, within AO356_08730at 1965.708 kb on + strand, within AO356_08730at 1965.708 kb on + strand, within AO356_08730at 1965.708 kb on + strand, within AO356_08730at 1965.708 kb on + strand, within AO356_08730at 1965.709 kb on - strand, within AO356_08730at 1965.709 kb on - strand, within AO356_08730at 1965.709 kb on - strand, within AO356_08730at 1965.709 kb on - strand, within AO356_08730at 1965.709 kb on - strand, within AO356_08730at 1965.855 kb on + strand, within AO356_08730at 1965.855 kb on + strand, within AO356_08730at 1965.856 kb on - strand, within AO356_08730at 1965.933 kb on + strand, within AO356_08730at 1965.933 kb on + strand, within AO356_08730at 1965.933 kb on + strand, within AO356_08730at 1965.933 kb on + strand, within AO356_08730at 1965.933 kb on + strand, within AO356_08730at 1965.934 kb on - strand, within AO356_08730at 1965.934 kb on - strand, within AO356_08730at 1965.934 kb on - strand, within AO356_08730at 1965.934 kb on - strand, within AO356_08730at 1965.934 kb on - strand, within AO356_08730at 1966.185 kb on + strand, within AO356_08730at 1966.186 kb on - strand, within AO356_08730at 1966.186 kb on - strand, within AO356_08730at 1966.186 kb on - strand, within AO356_08730at 1966.201 kb on + strand, within AO356_08730at 1966.201 kb on + strand, within AO356_08730at 1966.202 kb on - strand, within AO356_08730at 1966.202 kb on - strand, within AO356_08730at 1966.202 kb on - strand, within AO356_08730at 1966.362 kb on + strandat 1966.363 kb on - strandat 1966.648 kb on + strandat 1966.648 kb on + strandat 1966.648 kb on + strandat 1966.649 kb on - strandat 1966.917 kb on + strand, within AO356_08735at 1966.917 kb on + strand, within AO356_08735at 1966.917 kb on + strand, within AO356_08735at 1966.917 kb on + strand, within AO356_08735at 1966.917 kb on + strand, within AO356_08735at 1966.917 kb on + strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.918 kb on - strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.921 kb on + strand, within AO356_08735at 1966.922 kb on - strand, within AO356_08735at 1966.922 kb on - strand, within AO356_08735at 1966.922 kb on - strand, within AO356_08735at 1966.960 kb on + strand, within AO356_08735at 1966.960 kb on + strand, within AO356_08735at 1966.961 kb on - strand, within AO356_08735at 1966.961 kb on - strand, within AO356_08735at 1966.961 kb on - strand, within AO356_08735at 1966.961 kb on - strand, within AO356_08735at 1966.993 kb on + strand, within AO356_08735at 1966.994 kb on - strand, within AO356_08735at 1967.090 kb on + strand, within AO356_08735at 1967.090 kb on + strand, within AO356_08735at 1967.090 kb on + strand, within AO356_08735at 1967.090 kb on + strand, within AO356_08735at 1967.090 kb on + strand, within AO356_08735at 1967.091 kb on - strand, within AO356_08735at 1967.091 kb on - strand, within AO356_08735at 1967.462 kb on - strand, within AO356_08735at 1967.510 kb on + strand, within AO356_08735at 1967.569 kb on + strand, within AO356_08735at 1967.569 kb on + strand, within AO356_08735at 1967.570 kb on - strand, within AO356_08735at 1967.570 kb on - strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.617 kb on + strand, within AO356_08735at 1967.618 kb on - strand, within AO356_08735at 1967.805 kb on + strandat 1967.805 kb on + strandat 1967.805 kb on + strandat 1967.805 kb on + strandat 1967.806 kb on - strandat 1967.806 kb on - strandat 1967.806 kb on - strandat 1967.806 kb on - strandat 1967.806 kb on - strandat 1967.860 kb on + strandat 1967.860 kb on + strandat 1967.860 kb on + strandat 1967.861 kb on - strandat 1967.861 kb on - strandat 1967.861 kb on - strandat 1967.861 kb on - strandat 1967.861 kb on - strandat 1967.919 kb on + strandat 1967.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,965,705 + AO356_08730 0.58 +0.2
1,965,705 + AO356_08730 0.58 +0.3
1,965,705 + AO356_08730 0.58 -0.1
1,965,705 + AO356_08730 0.58 +0.4
1,965,706 - AO356_08730 0.58 -0.3
1,965,706 - AO356_08730 0.58 +0.5
1,965,706 - AO356_08730 0.58 -0.2
1,965,706 - AO356_08730 0.58 -0.2
1,965,706 - AO356_08730 0.58 +0.7
1,965,706 - AO356_08730 0.58 +0.3
1,965,708 + AO356_08730 0.58 +0.1
1,965,708 + AO356_08730 0.58 -0.0
1,965,708 + AO356_08730 0.58 +0.6
1,965,708 + AO356_08730 0.58 +0.3
1,965,709 - AO356_08730 0.58 +0.1
1,965,709 - AO356_08730 0.58 -0.4
1,965,709 - AO356_08730 0.58 -0.3
1,965,709 - AO356_08730 0.58 +0.2
1,965,709 - AO356_08730 0.58 -0.1
1,965,855 + AO356_08730 0.67 -0.6
1,965,855 + AO356_08730 0.67 +1.2
1,965,856 - AO356_08730 0.67 +1.0
1,965,933 + AO356_08730 0.71 +0.6
1,965,933 + AO356_08730 0.71 +0.2
1,965,933 + AO356_08730 0.71 +0.0
1,965,933 + AO356_08730 0.71 -0.8
1,965,933 + AO356_08730 0.71 +0.5
1,965,934 - AO356_08730 0.71 +0.6
1,965,934 - AO356_08730 0.71 +0.1
1,965,934 - AO356_08730 0.71 +0.8
1,965,934 - AO356_08730 0.71 +0.6
1,965,934 - AO356_08730 0.71 -0.1
1,966,185 + AO356_08730 0.85 -0.4
1,966,186 - AO356_08730 0.85 +0.1
1,966,186 - AO356_08730 0.85 -0.5
1,966,186 - AO356_08730 0.85 -0.3
1,966,201 + AO356_08730 0.86 -0.5
1,966,201 + AO356_08730 0.86 +0.4
1,966,202 - AO356_08730 0.86 +1.0
1,966,202 - AO356_08730 0.86 -0.1
1,966,202 - AO356_08730 0.86 +0.7
1,966,362 + +0.2
1,966,363 - -0.5
1,966,648 + -2.9
1,966,648 + -2.0
1,966,648 + -1.8
1,966,649 - -2.5
1,966,917 + AO356_08735 0.25 -3.0
1,966,917 + AO356_08735 0.25 -2.2
1,966,917 + AO356_08735 0.25 -2.7
1,966,917 + AO356_08735 0.25 -1.4
1,966,917 + AO356_08735 0.25 -2.2
1,966,917 + AO356_08735 0.25 -3.7
1,966,918 - AO356_08735 0.25 -1.7
1,966,918 - AO356_08735 0.25 -3.0
1,966,918 - AO356_08735 0.25 -3.0
1,966,918 - AO356_08735 0.25 -1.9
1,966,918 - AO356_08735 0.25 -3.1
1,966,918 - AO356_08735 0.25 -2.0
1,966,918 - AO356_08735 0.25 -1.2
1,966,921 + AO356_08735 0.26 -2.9
1,966,921 + AO356_08735 0.26 -3.2
1,966,921 + AO356_08735 0.26 -2.7
1,966,921 + AO356_08735 0.26 -3.0
1,966,921 + AO356_08735 0.26 -3.7
1,966,921 + AO356_08735 0.26 -2.2
1,966,921 + AO356_08735 0.26 -1.8
1,966,921 + AO356_08735 0.26 -2.8
1,966,921 + AO356_08735 0.26 -1.2
1,966,921 + AO356_08735 0.26 +0.2
1,966,921 + AO356_08735 0.26 -3.1
1,966,922 - AO356_08735 0.26 -2.3
1,966,922 - AO356_08735 0.26 -1.7
1,966,922 - AO356_08735 0.26 -1.6
1,966,960 + AO356_08735 0.29 -4.0
1,966,960 + AO356_08735 0.29 -2.1
1,966,961 - AO356_08735 0.29 -2.6
1,966,961 - AO356_08735 0.29 -2.9
1,966,961 - AO356_08735 0.29 -2.5
1,966,961 - AO356_08735 0.29 -3.6
1,966,993 + AO356_08735 0.31 -3.5
1,966,994 - AO356_08735 0.32 -3.0
1,967,090 + AO356_08735 0.39 -2.3
1,967,090 + AO356_08735 0.39 -4.5
1,967,090 + AO356_08735 0.39 -3.6
1,967,090 + AO356_08735 0.39 -2.7
1,967,090 + AO356_08735 0.39 -1.3
1,967,091 - AO356_08735 0.40 -1.2
1,967,091 - AO356_08735 0.40 -2.2
1,967,462 - AO356_08735 0.70 -2.0
1,967,510 + AO356_08735 0.74 -2.2
1,967,569 + AO356_08735 0.79 -3.8
1,967,569 + AO356_08735 0.79 -3.6
1,967,570 - AO356_08735 0.79 -3.0
1,967,570 - AO356_08735 0.79 +1.2
1,967,617 + AO356_08735 0.83 -2.9
1,967,617 + AO356_08735 0.83 -2.8
1,967,617 + AO356_08735 0.83 -2.4
1,967,617 + AO356_08735 0.83 -3.1
1,967,617 + AO356_08735 0.83 -1.4
1,967,617 + AO356_08735 0.83 -2.4
1,967,618 - AO356_08735 0.83 -2.2
1,967,805 + -2.1
1,967,805 + -3.0
1,967,805 + -2.5
1,967,805 + -2.5
1,967,806 - -3.0
1,967,806 - -2.8
1,967,806 - -2.0
1,967,806 - -2.5
1,967,806 - -3.0
1,967,860 + -1.1
1,967,860 + +0.2
1,967,860 + +0.2
1,967,861 - +0.4
1,967,861 - +0.8
1,967,861 - +0.4
1,967,861 - -0.4
1,967,861 - +0.7
1,967,919 + +0.1
1,967,921 + +0.7

Or see this region's nucleotide sequence