Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08280

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08270 and AO356_08275 overlap by 1 nucleotidesAO356_08275 and AO356_08280 overlap by 8 nucleotidesAO356_08280 and AO356_08285 are separated by 302 nucleotides AO356_08270: AO356_08270 - precorrin-2 C20-methyltransferase, at 1,861,300 to 1,862,031 _08270 AO356_08275: AO356_08275 - precorrin isomerase, at 1,862,031 to 1,862,657 _08275 AO356_08280: AO356_08280 - oxidoreductase, at 1,862,650 to 1,863,969 _08280 AO356_08285: AO356_08285 - Zeta toxin, at 1,864,272 to 1,865,177 _08285 Position (kb) 1862 1863 1864Strain fitness (log2 ratio) -2 -1 0 1 2at 1861.676 kb on + strand, within AO356_08270at 1861.676 kb on + strand, within AO356_08270at 1861.676 kb on + strand, within AO356_08270at 1861.676 kb on + strand, within AO356_08270at 1861.676 kb on + strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.677 kb on - strand, within AO356_08270at 1861.682 kb on + strand, within AO356_08270at 1861.682 kb on + strand, within AO356_08270at 1861.682 kb on + strand, within AO356_08270at 1861.682 kb on + strand, within AO356_08270at 1861.682 kb on + strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.683 kb on - strand, within AO356_08270at 1861.692 kb on - strand, within AO356_08270at 1861.692 kb on - strand, within AO356_08270at 1861.775 kb on + strand, within AO356_08270at 1861.775 kb on + strand, within AO356_08270at 1861.775 kb on + strand, within AO356_08270at 1861.776 kb on - strand, within AO356_08270at 1861.776 kb on - strand, within AO356_08270at 1861.776 kb on - strand, within AO356_08270at 1861.776 kb on - strand, within AO356_08270at 1861.799 kb on + strand, within AO356_08270at 1861.799 kb on + strand, within AO356_08270at 1861.800 kb on - strand, within AO356_08270at 1861.926 kb on - strand, within AO356_08270at 1861.971 kb on + strandat 1862.233 kb on + strand, within AO356_08275at 1862.233 kb on + strand, within AO356_08275at 1862.234 kb on - strand, within AO356_08275at 1862.234 kb on - strand, within AO356_08275at 1862.234 kb on - strand, within AO356_08275at 1862.234 kb on - strand, within AO356_08275at 1862.234 kb on - strand, within AO356_08275at 1862.623 kb on + strandat 1862.624 kb on - strandat 1862.624 kb on - strandat 1862.624 kb on - strandat 1862.647 kb on + strandat 1862.647 kb on + strandat 1862.647 kb on + strandat 1862.647 kb on + strandat 1862.647 kb on + strandat 1862.647 kb on + strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.648 kb on - strandat 1862.706 kb on + strandat 1862.707 kb on - strandat 1862.989 kb on + strand, within AO356_08280at 1862.990 kb on - strand, within AO356_08280at 1863.173 kb on + strand, within AO356_08280at 1863.173 kb on + strand, within AO356_08280at 1863.173 kb on + strand, within AO356_08280at 1863.174 kb on - strand, within AO356_08280at 1863.174 kb on - strand, within AO356_08280at 1863.174 kb on - strand, within AO356_08280at 1863.985 kb on + strandat 1863.985 kb on + strandat 1863.986 kb on - strandat 1863.986 kb on - strandat 1863.986 kb on - strandat 1863.986 kb on - strandat 1863.986 kb on - strandat 1864.017 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.082 kb on + strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.083 kb on - strandat 1864.084 kb on + strandat 1864.084 kb on + strandat 1864.085 kb on - strandat 1864.121 kb on + strandat 1864.161 kb on - strandat 1864.170 kb on - strandat 1864.173 kb on + strandat 1864.173 kb on + strandat 1864.174 kb on - strandat 1864.219 kb on + strandat 1864.219 kb on + strandat 1864.290 kb on + strandat 1864.291 kb on - strandat 1864.291 kb on - strandat 1864.291 kb on - strandat 1864.291 kb on - strandat 1864.296 kb on + strandat 1864.296 kb on + strandat 1864.296 kb on + strandat 1864.296 kb on + strandat 1864.296 kb on + strandat 1864.296 kb on + strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.297 kb on - strandat 1864.323 kb on + strandat 1864.323 kb on + strandat 1864.419 kb on + strand, within AO356_08285at 1864.419 kb on + strand, within AO356_08285at 1864.419 kb on + strand, within AO356_08285at 1864.419 kb on + strand, within AO356_08285at 1864.420 kb on - strand, within AO356_08285at 1864.420 kb on - strand, within AO356_08285at 1864.420 kb on - strand, within AO356_08285at 1864.420 kb on - strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.464 kb on + strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.465 kb on - strand, within AO356_08285at 1864.468 kb on + strand, within AO356_08285at 1864.469 kb on - strand, within AO356_08285at 1864.469 kb on - strand, within AO356_08285at 1864.469 kb on - strand, within AO356_08285at 1864.476 kb on + strand, within AO356_08285at 1864.476 kb on + strand, within AO356_08285at 1864.476 kb on + strand, within AO356_08285at 1864.477 kb on - strand, within AO356_08285at 1864.477 kb on - strand, within AO356_08285at 1864.477 kb on - strand, within AO356_08285at 1864.477 kb on - strand, within AO356_08285at 1864.545 kb on + strand, within AO356_08285at 1864.545 kb on + strand, within AO356_08285at 1864.545 kb on + strand, within AO356_08285at 1864.546 kb on - strand, within AO356_08285at 1864.553 kb on + strand, within AO356_08285at 1864.553 kb on + strand, within AO356_08285at 1864.553 kb on + strand, within AO356_08285at 1864.553 kb on + strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.554 kb on - strand, within AO356_08285at 1864.614 kb on + strand, within AO356_08285at 1864.614 kb on + strand, within AO356_08285at 1864.615 kb on - strand, within AO356_08285at 1864.615 kb on - strand, within AO356_08285at 1864.615 kb on - strand, within AO356_08285at 1864.746 kb on - strand, within AO356_08285at 1864.814 kb on + strand, within AO356_08285at 1864.896 kb on + strand, within AO356_08285at 1864.896 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.950 kb on + strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.951 kb on - strand, within AO356_08285at 1864.953 kb on - strand, within AO356_08285

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,861,676 + AO356_08270 0.51 -0.4
1,861,676 + AO356_08270 0.51 -0.3
1,861,676 + AO356_08270 0.51 +0.2
1,861,676 + AO356_08270 0.51 -1.8
1,861,676 + AO356_08270 0.51 +0.0
1,861,677 - AO356_08270 0.52 +0.1
1,861,677 - AO356_08270 0.52 -0.4
1,861,677 - AO356_08270 0.52 -0.9
1,861,677 - AO356_08270 0.52 +0.4
1,861,677 - AO356_08270 0.52 -0.8
1,861,677 - AO356_08270 0.52 -0.5
1,861,677 - AO356_08270 0.52 +2.4
1,861,677 - AO356_08270 0.52 +0.2
1,861,677 - AO356_08270 0.52 -0.8
1,861,682 + AO356_08270 0.52 -0.3
1,861,682 + AO356_08270 0.52 +0.2
1,861,682 + AO356_08270 0.52 -1.8
1,861,682 + AO356_08270 0.52 -0.3
1,861,682 + AO356_08270 0.52 -0.1
1,861,683 - AO356_08270 0.52 -1.8
1,861,683 - AO356_08270 0.52 +1.3
1,861,683 - AO356_08270 0.52 -0.3
1,861,683 - AO356_08270 0.52 -0.7
1,861,683 - AO356_08270 0.52 -0.8
1,861,683 - AO356_08270 0.52 -1.1
1,861,683 - AO356_08270 0.52 -0.9
1,861,683 - AO356_08270 0.52 -0.2
1,861,683 - AO356_08270 0.52 -0.7
1,861,683 - AO356_08270 0.52 +0.4
1,861,683 - AO356_08270 0.52 +0.8
1,861,692 - AO356_08270 0.54 -0.7
1,861,692 - AO356_08270 0.54 +0.4
1,861,775 + AO356_08270 0.65 -1.7
1,861,775 + AO356_08270 0.65 -1.1
1,861,775 + AO356_08270 0.65 -2.4
1,861,776 - AO356_08270 0.65 -1.0
1,861,776 - AO356_08270 0.65 -2.1
1,861,776 - AO356_08270 0.65 -1.7
1,861,776 - AO356_08270 0.65 +0.1
1,861,799 + AO356_08270 0.68 +0.1
1,861,799 + AO356_08270 0.68 -0.6
1,861,800 - AO356_08270 0.68 -1.3
1,861,926 - AO356_08270 0.86 -0.6
1,861,971 + -0.7
1,862,233 + AO356_08275 0.32 -0.8
1,862,233 + AO356_08275 0.32 -0.1
1,862,234 - AO356_08275 0.32 -1.2
1,862,234 - AO356_08275 0.32 -1.0
1,862,234 - AO356_08275 0.32 -1.3
1,862,234 - AO356_08275 0.32 -0.2
1,862,234 - AO356_08275 0.32 -1.6
1,862,623 + -0.2
1,862,624 - -0.2
1,862,624 - -0.1
1,862,624 - -0.3
1,862,647 + -1.2
1,862,647 + -1.5
1,862,647 + -0.5
1,862,647 + -0.4
1,862,647 + +0.9
1,862,647 + +0.5
1,862,648 - -0.6
1,862,648 - +0.2
1,862,648 - +0.5
1,862,648 - +0.1
1,862,648 - +0.6
1,862,648 - -0.3
1,862,648 - -1.2
1,862,648 - -0.4
1,862,706 + -0.2
1,862,707 - +0.5
1,862,989 + AO356_08280 0.26 -0.5
1,862,990 - AO356_08280 0.26 +0.0
1,863,173 + AO356_08280 0.40 +2.1
1,863,173 + AO356_08280 0.40 -1.1
1,863,173 + AO356_08280 0.40 -0.3
1,863,174 - AO356_08280 0.40 -1.3
1,863,174 - AO356_08280 0.40 -0.1
1,863,174 - AO356_08280 0.40 -1.9
1,863,985 + -0.0
1,863,985 + -0.2
1,863,986 - +0.3
1,863,986 - +0.2
1,863,986 - +0.3
1,863,986 - +0.2
1,863,986 - -1.3
1,864,017 + -0.3
1,864,082 + +0.6
1,864,082 + -0.1
1,864,082 + -0.2
1,864,082 + -0.1
1,864,082 + -0.9
1,864,082 + +0.6
1,864,082 + -0.1
1,864,082 + -0.2
1,864,082 + +0.8
1,864,082 + +0.1
1,864,082 + +1.1
1,864,082 + +0.5
1,864,082 + -1.5
1,864,082 + -0.3
1,864,083 - -0.4
1,864,083 - +0.7
1,864,083 - -0.4
1,864,083 - +0.5
1,864,083 - -0.8
1,864,083 - +0.7
1,864,083 - -0.2
1,864,083 - +0.1
1,864,083 - +0.4
1,864,083 - -0.3
1,864,083 - +0.7
1,864,083 - +1.4
1,864,083 - +0.1
1,864,083 - -0.2
1,864,084 + +0.3
1,864,084 + +1.1
1,864,085 - +0.4
1,864,121 + -0.1
1,864,161 - +0.8
1,864,170 - +1.0
1,864,173 + +0.1
1,864,173 + +0.3
1,864,174 - +0.4
1,864,219 + +0.2
1,864,219 + +0.3
1,864,290 + +0.2
1,864,291 - -0.1
1,864,291 - +1.0
1,864,291 - +0.3
1,864,291 - +0.2
1,864,296 + +2.1
1,864,296 + +0.1
1,864,296 + -0.3
1,864,296 + +0.2
1,864,296 + +1.4
1,864,296 + +0.1
1,864,297 - +0.3
1,864,297 - +0.4
1,864,297 - +0.0
1,864,297 - +0.2
1,864,297 - +1.3
1,864,297 - -0.6
1,864,297 - -0.3
1,864,323 + +0.1
1,864,323 + +0.2
1,864,419 + AO356_08285 0.16 -0.3
1,864,419 + AO356_08285 0.16 +0.8
1,864,419 + AO356_08285 0.16 -0.0
1,864,419 + AO356_08285 0.16 -1.5
1,864,420 - AO356_08285 0.16 +0.3
1,864,420 - AO356_08285 0.16 -0.0
1,864,420 - AO356_08285 0.16 -0.1
1,864,420 - AO356_08285 0.16 +0.3
1,864,464 + AO356_08285 0.21 +0.0
1,864,464 + AO356_08285 0.21 -0.7
1,864,464 + AO356_08285 0.21 +0.9
1,864,464 + AO356_08285 0.21 +0.1
1,864,464 + AO356_08285 0.21 -0.2
1,864,464 + AO356_08285 0.21 -0.8
1,864,464 + AO356_08285 0.21 +0.3
1,864,464 + AO356_08285 0.21 -0.0
1,864,464 + AO356_08285 0.21 +1.3
1,864,464 + AO356_08285 0.21 +0.7
1,864,464 + AO356_08285 0.21 +0.7
1,864,464 + AO356_08285 0.21 +0.3
1,864,464 + AO356_08285 0.21 +0.6
1,864,464 + AO356_08285 0.21 +0.5
1,864,465 - AO356_08285 0.21 +0.0
1,864,465 - AO356_08285 0.21 +0.3
1,864,465 - AO356_08285 0.21 -0.7
1,864,465 - AO356_08285 0.21 -0.3
1,864,465 - AO356_08285 0.21 +0.9
1,864,465 - AO356_08285 0.21 -0.1
1,864,465 - AO356_08285 0.21 +0.9
1,864,465 - AO356_08285 0.21 -0.3
1,864,465 - AO356_08285 0.21 +0.1
1,864,465 - AO356_08285 0.21 +0.7
1,864,465 - AO356_08285 0.21 -0.1
1,864,465 - AO356_08285 0.21 -0.1
1,864,465 - AO356_08285 0.21 +0.8
1,864,465 - AO356_08285 0.21 -0.3
1,864,465 - AO356_08285 0.21 -0.4
1,864,465 - AO356_08285 0.21 +1.0
1,864,465 - AO356_08285 0.21 +0.8
1,864,468 + AO356_08285 0.22 -0.9
1,864,469 - AO356_08285 0.22 +0.1
1,864,469 - AO356_08285 0.22 +0.5
1,864,469 - AO356_08285 0.22 -0.1
1,864,476 + AO356_08285 0.23 -0.1
1,864,476 + AO356_08285 0.23 +0.2
1,864,476 + AO356_08285 0.23 -0.0
1,864,477 - AO356_08285 0.23 -0.2
1,864,477 - AO356_08285 0.23 -0.7
1,864,477 - AO356_08285 0.23 -0.0
1,864,477 - AO356_08285 0.23 +0.0
1,864,545 + AO356_08285 0.30 +0.1
1,864,545 + AO356_08285 0.30 +0.4
1,864,545 + AO356_08285 0.30 +0.5
1,864,546 - AO356_08285 0.30 -0.5
1,864,553 + AO356_08285 0.31 +0.1
1,864,553 + AO356_08285 0.31 -0.6
1,864,553 + AO356_08285 0.31 +0.1
1,864,553 + AO356_08285 0.31 +0.7
1,864,554 - AO356_08285 0.31 +0.0
1,864,554 - AO356_08285 0.31 -0.1
1,864,554 - AO356_08285 0.31 +0.9
1,864,554 - AO356_08285 0.31 -0.0
1,864,554 - AO356_08285 0.31 +0.1
1,864,554 - AO356_08285 0.31 +0.6
1,864,554 - AO356_08285 0.31 +0.3
1,864,554 - AO356_08285 0.31 +0.6
1,864,614 + AO356_08285 0.38 +0.2
1,864,614 + AO356_08285 0.38 -0.7
1,864,615 - AO356_08285 0.38 +0.4
1,864,615 - AO356_08285 0.38 +0.0
1,864,615 - AO356_08285 0.38 +0.9
1,864,746 - AO356_08285 0.52 -0.3
1,864,814 + AO356_08285 0.60 +0.2
1,864,896 + AO356_08285 0.69 +0.5
1,864,896 + AO356_08285 0.69 +1.3
1,864,950 + AO356_08285 0.75 -0.2
1,864,950 + AO356_08285 0.75 -0.1
1,864,950 + AO356_08285 0.75 +0.3
1,864,950 + AO356_08285 0.75 -0.6
1,864,950 + AO356_08285 0.75 +0.3
1,864,950 + AO356_08285 0.75 +1.0
1,864,950 + AO356_08285 0.75 -0.5
1,864,950 + AO356_08285 0.75 +0.4
1,864,950 + AO356_08285 0.75 +0.5
1,864,950 + AO356_08285 0.75 -0.9
1,864,951 - AO356_08285 0.75 +0.8
1,864,951 - AO356_08285 0.75 -0.1
1,864,951 - AO356_08285 0.75 +0.1
1,864,951 - AO356_08285 0.75 +0.5
1,864,951 - AO356_08285 0.75 +1.5
1,864,951 - AO356_08285 0.75 -0.4
1,864,951 - AO356_08285 0.75 -0.8
1,864,953 - AO356_08285 0.75 +0.3

Or see this region's nucleotide sequence