Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08235

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08230 and AO356_08235 are separated by 99 nucleotidesAO356_08235 and AO356_08240 are separated by 38 nucleotidesAO356_08240 and AO356_08245 overlap by 4 nucleotides AO356_08230: AO356_08230 - phosphoribosylamine--glycine ligase, at 1,844,841 to 1,846,136 _08230 AO356_08235: AO356_08235 - histidine kinase, at 1,846,236 to 1,849,010 _08235 AO356_08240: AO356_08240 - hypothetical protein, at 1,849,049 to 1,849,729 _08240 AO356_08245: AO356_08245 - hypothetical protein, at 1,849,726 to 1,850,451 _08245 Position (kb) 1846 1847 1848 1849 1850Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1846.038 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.197 kb on + strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.198 kb on - strandat 1846.201 kb on + strandat 1846.201 kb on + strandat 1846.201 kb on + strandat 1846.201 kb on + strandat 1846.201 kb on + strandat 1846.201 kb on + strandat 1846.202 kb on - strandat 1846.203 kb on + strandat 1846.203 kb on + strandat 1846.203 kb on + strandat 1846.203 kb on + strandat 1846.204 kb on - strandat 1846.219 kb on + strandat 1846.219 kb on + strandat 1846.219 kb on + strandat 1846.219 kb on + strandat 1846.219 kb on + strandat 1846.220 kb on - strandat 1846.259 kb on - strandat 1846.533 kb on + strand, within AO356_08235at 1846.533 kb on + strand, within AO356_08235at 1846.533 kb on + strand, within AO356_08235at 1846.533 kb on + strand, within AO356_08235at 1846.533 kb on + strand, within AO356_08235at 1846.593 kb on - strand, within AO356_08235at 1846.663 kb on - strand, within AO356_08235at 1846.699 kb on - strand, within AO356_08235at 1846.755 kb on + strand, within AO356_08235at 1846.755 kb on + strand, within AO356_08235at 1846.755 kb on + strand, within AO356_08235at 1846.755 kb on + strand, within AO356_08235at 1846.756 kb on - strand, within AO356_08235at 1846.756 kb on - strand, within AO356_08235at 1846.756 kb on - strand, within AO356_08235at 1846.756 kb on - strand, within AO356_08235at 1846.756 kb on - strand, within AO356_08235at 1846.810 kb on - strand, within AO356_08235at 1846.815 kb on + strand, within AO356_08235at 1846.815 kb on + strand, within AO356_08235at 1846.815 kb on + strand, within AO356_08235at 1846.944 kb on + strand, within AO356_08235at 1846.944 kb on + strand, within AO356_08235at 1847.106 kb on - strand, within AO356_08235at 1847.106 kb on - strand, within AO356_08235at 1847.115 kb on + strand, within AO356_08235at 1847.115 kb on + strand, within AO356_08235at 1847.116 kb on - strand, within AO356_08235at 1847.116 kb on - strand, within AO356_08235at 1847.116 kb on - strand, within AO356_08235at 1847.538 kb on + strand, within AO356_08235at 1847.538 kb on + strand, within AO356_08235at 1847.538 kb on + strand, within AO356_08235at 1847.538 kb on + strand, within AO356_08235at 1847.538 kb on + strand, within AO356_08235at 1847.539 kb on - strand, within AO356_08235at 1847.539 kb on - strand, within AO356_08235at 1848.164 kb on - strand, within AO356_08235at 1848.495 kb on + strand, within AO356_08235at 1848.496 kb on - strand, within AO356_08235at 1848.498 kb on - strand, within AO356_08235at 1848.803 kb on - strandat 1848.803 kb on - strandat 1849.242 kb on + strand, within AO356_08240at 1849.242 kb on + strand, within AO356_08240at 1849.242 kb on + strand, within AO356_08240at 1849.242 kb on + strand, within AO356_08240at 1849.243 kb on - strand, within AO356_08240at 1849.243 kb on - strand, within AO356_08240at 1849.243 kb on - strand, within AO356_08240at 1849.243 kb on - strand, within AO356_08240at 1849.243 kb on - strand, within AO356_08240at 1849.316 kb on + strand, within AO356_08240at 1849.316 kb on + strand, within AO356_08240at 1849.395 kb on + strand, within AO356_08240at 1849.501 kb on - strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.518 kb on + strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.519 kb on - strand, within AO356_08240at 1849.521 kb on + strand, within AO356_08240at 1849.521 kb on + strand, within AO356_08240at 1849.521 kb on + strand, within AO356_08240at 1849.521 kb on + strand, within AO356_08240at 1849.555 kb on - strand, within AO356_08240at 1849.581 kb on + strand, within AO356_08240at 1849.581 kb on + strand, within AO356_08240at 1849.582 kb on - strand, within AO356_08240at 1849.582 kb on - strand, within AO356_08240at 1849.582 kb on - strand, within AO356_08240at 1849.596 kb on + strand, within AO356_08240at 1849.596 kb on + strand, within AO356_08240at 1849.596 kb on + strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.597 kb on - strand, within AO356_08240at 1849.600 kb on + strand, within AO356_08240at 1849.600 kb on + strand, within AO356_08240at 1849.600 kb on + strand, within AO356_08240at 1849.601 kb on - strand, within AO356_08240at 1849.645 kb on + strand, within AO356_08240at 1849.645 kb on + strand, within AO356_08240at 1849.645 kb on + strand, within AO356_08240at 1849.730 kb on - strandat 1849.774 kb on - strandat 1849.774 kb on - strandat 1849.838 kb on + strand, within AO356_08245at 1849.839 kb on - strand, within AO356_08245at 1849.839 kb on - strand, within AO356_08245at 1849.881 kb on + strand, within AO356_08245at 1849.882 kb on - strand, within AO356_08245at 1849.972 kb on + strand, within AO356_08245at 1849.972 kb on + strand, within AO356_08245at 1849.973 kb on - strand, within AO356_08245

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,846,038 + -2.0
1,846,197 + -1.0
1,846,197 + +0.7
1,846,197 + -0.5
1,846,197 + +0.1
1,846,197 + -0.5
1,846,197 + -0.2
1,846,197 + -0.6
1,846,197 + +0.5
1,846,197 + +1.0
1,846,197 + -0.1
1,846,197 + +0.0
1,846,197 + +0.1
1,846,197 + -0.7
1,846,198 - -0.3
1,846,198 - +0.3
1,846,198 - +0.3
1,846,198 - -0.7
1,846,198 - -2.1
1,846,198 - -0.8
1,846,198 - -0.4
1,846,198 - -1.3
1,846,198 - -2.0
1,846,198 - -0.2
1,846,201 + +0.1
1,846,201 + +0.4
1,846,201 + +0.6
1,846,201 + -0.9
1,846,201 + +0.4
1,846,201 + -0.5
1,846,202 - -0.6
1,846,203 + +0.2
1,846,203 + +0.3
1,846,203 + +0.4
1,846,203 + +1.1
1,846,204 - -1.0
1,846,219 + -0.1
1,846,219 + +0.3
1,846,219 + +0.6
1,846,219 + -1.6
1,846,219 + -0.4
1,846,220 - -0.8
1,846,259 - -0.9
1,846,533 + AO356_08235 0.11 -1.6
1,846,533 + AO356_08235 0.11 -1.2
1,846,533 + AO356_08235 0.11 -1.3
1,846,533 + AO356_08235 0.11 -1.6
1,846,533 + AO356_08235 0.11 -0.8
1,846,593 - AO356_08235 0.13 -2.0
1,846,663 - AO356_08235 0.15 -2.7
1,846,699 - AO356_08235 0.17 -1.0
1,846,755 + AO356_08235 0.19 -0.8
1,846,755 + AO356_08235 0.19 -2.8
1,846,755 + AO356_08235 0.19 +0.2
1,846,755 + AO356_08235 0.19 -1.3
1,846,756 - AO356_08235 0.19 +0.2
1,846,756 - AO356_08235 0.19 -1.9
1,846,756 - AO356_08235 0.19 -1.1
1,846,756 - AO356_08235 0.19 -1.1
1,846,756 - AO356_08235 0.19 -0.3
1,846,810 - AO356_08235 0.21 +0.8
1,846,815 + AO356_08235 0.21 -1.8
1,846,815 + AO356_08235 0.21 -0.9
1,846,815 + AO356_08235 0.21 +0.8
1,846,944 + AO356_08235 0.26 -2.6
1,846,944 + AO356_08235 0.26 -0.5
1,847,106 - AO356_08235 0.31 -1.9
1,847,106 - AO356_08235 0.31 -2.4
1,847,115 + AO356_08235 0.32 -1.5
1,847,115 + AO356_08235 0.32 -2.4
1,847,116 - AO356_08235 0.32 -2.2
1,847,116 - AO356_08235 0.32 -1.3
1,847,116 - AO356_08235 0.32 -0.7
1,847,538 + AO356_08235 0.47 -0.2
1,847,538 + AO356_08235 0.47 -0.3
1,847,538 + AO356_08235 0.47 -0.5
1,847,538 + AO356_08235 0.47 +0.1
1,847,538 + AO356_08235 0.47 +0.0
1,847,539 - AO356_08235 0.47 -1.6
1,847,539 - AO356_08235 0.47 -3.4
1,848,164 - AO356_08235 0.69 -0.4
1,848,495 + AO356_08235 0.81 -1.7
1,848,496 - AO356_08235 0.81 -1.0
1,848,498 - AO356_08235 0.82 -2.1
1,848,803 - +0.3
1,848,803 - -2.2
1,849,242 + AO356_08240 0.28 -1.2
1,849,242 + AO356_08240 0.28 +0.4
1,849,242 + AO356_08240 0.28 +0.2
1,849,242 + AO356_08240 0.28 -0.7
1,849,243 - AO356_08240 0.28 -0.3
1,849,243 - AO356_08240 0.28 -0.7
1,849,243 - AO356_08240 0.28 -0.6
1,849,243 - AO356_08240 0.28 -0.7
1,849,243 - AO356_08240 0.28 +0.6
1,849,316 + AO356_08240 0.39 +0.4
1,849,316 + AO356_08240 0.39 +0.2
1,849,395 + AO356_08240 0.51 -0.1
1,849,501 - AO356_08240 0.66 +0.4
1,849,518 + AO356_08240 0.69 +0.5
1,849,518 + AO356_08240 0.69 -0.3
1,849,518 + AO356_08240 0.69 -0.7
1,849,518 + AO356_08240 0.69 -0.3
1,849,518 + AO356_08240 0.69 +0.4
1,849,518 + AO356_08240 0.69 -0.1
1,849,518 + AO356_08240 0.69 +0.1
1,849,518 + AO356_08240 0.69 +1.2
1,849,519 - AO356_08240 0.69 +0.2
1,849,519 - AO356_08240 0.69 -0.3
1,849,519 - AO356_08240 0.69 +0.4
1,849,519 - AO356_08240 0.69 +1.0
1,849,519 - AO356_08240 0.69 +0.2
1,849,519 - AO356_08240 0.69 +0.1
1,849,521 + AO356_08240 0.69 +0.8
1,849,521 + AO356_08240 0.69 +0.1
1,849,521 + AO356_08240 0.69 +0.9
1,849,521 + AO356_08240 0.69 -0.2
1,849,555 - AO356_08240 0.74 +1.8
1,849,581 + AO356_08240 0.78 +0.1
1,849,581 + AO356_08240 0.78 -0.2
1,849,582 - AO356_08240 0.78 +0.8
1,849,582 - AO356_08240 0.78 +0.3
1,849,582 - AO356_08240 0.78 +0.1
1,849,596 + AO356_08240 0.80 -0.5
1,849,596 + AO356_08240 0.80 +0.2
1,849,596 + AO356_08240 0.80 +0.5
1,849,597 - AO356_08240 0.80 +0.4
1,849,597 - AO356_08240 0.80 +0.2
1,849,597 - AO356_08240 0.80 +0.1
1,849,597 - AO356_08240 0.80 -0.2
1,849,597 - AO356_08240 0.80 -0.9
1,849,597 - AO356_08240 0.80 -0.1
1,849,600 + AO356_08240 0.81 +0.3
1,849,600 + AO356_08240 0.81 -1.3
1,849,600 + AO356_08240 0.81 +0.3
1,849,601 - AO356_08240 0.81 -0.2
1,849,645 + AO356_08240 0.88 +0.2
1,849,645 + AO356_08240 0.88 -0.4
1,849,645 + AO356_08240 0.88 -0.6
1,849,730 - -0.0
1,849,774 - -0.1
1,849,774 - -0.6
1,849,838 + AO356_08245 0.15 -0.9
1,849,839 - AO356_08245 0.16 +0.1
1,849,839 - AO356_08245 0.16 +0.7
1,849,881 + AO356_08245 0.21 -0.4
1,849,882 - AO356_08245 0.21 -0.1
1,849,972 + AO356_08245 0.34 +1.0
1,849,972 + AO356_08245 0.34 +0.5
1,849,973 - AO356_08245 0.34 +1.0

Or see this region's nucleotide sequence