Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08230 and AO356_08235 are separated by 99 nucleotides AO356_08235 and AO356_08240 are separated by 38 nucleotides AO356_08240 and AO356_08245 overlap by 4 nucleotides
AO356_08230: AO356_08230 - phosphoribosylamine--glycine ligase, at 1,844,841 to 1,846,136
_08230
AO356_08235: AO356_08235 - histidine kinase, at 1,846,236 to 1,849,010
_08235
AO356_08240: AO356_08240 - hypothetical protein, at 1,849,049 to 1,849,729
_08240
AO356_08245: AO356_08245 - hypothetical protein, at 1,849,726 to 1,850,451
_08245
Position (kb)
1846
1847
1848
1849
1850 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1846.038 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.197 kb on + strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.198 kb on - strand at 1846.201 kb on + strand at 1846.201 kb on + strand at 1846.201 kb on + strand at 1846.201 kb on + strand at 1846.201 kb on + strand at 1846.201 kb on + strand at 1846.202 kb on - strand at 1846.203 kb on + strand at 1846.203 kb on + strand at 1846.203 kb on + strand at 1846.203 kb on + strand at 1846.204 kb on - strand at 1846.219 kb on + strand at 1846.219 kb on + strand at 1846.219 kb on + strand at 1846.219 kb on + strand at 1846.219 kb on + strand at 1846.220 kb on - strand at 1846.259 kb on - strand at 1846.533 kb on + strand, within AO356_08235 at 1846.533 kb on + strand, within AO356_08235 at 1846.533 kb on + strand, within AO356_08235 at 1846.533 kb on + strand, within AO356_08235 at 1846.533 kb on + strand, within AO356_08235 at 1846.593 kb on - strand, within AO356_08235 at 1846.663 kb on - strand, within AO356_08235 at 1846.699 kb on - strand, within AO356_08235 at 1846.755 kb on + strand, within AO356_08235 at 1846.755 kb on + strand, within AO356_08235 at 1846.755 kb on + strand, within AO356_08235 at 1846.755 kb on + strand, within AO356_08235 at 1846.756 kb on - strand, within AO356_08235 at 1846.756 kb on - strand, within AO356_08235 at 1846.756 kb on - strand, within AO356_08235 at 1846.756 kb on - strand, within AO356_08235 at 1846.756 kb on - strand, within AO356_08235 at 1846.810 kb on - strand, within AO356_08235 at 1846.815 kb on + strand, within AO356_08235 at 1846.815 kb on + strand, within AO356_08235 at 1846.815 kb on + strand, within AO356_08235 at 1846.944 kb on + strand, within AO356_08235 at 1846.944 kb on + strand, within AO356_08235 at 1847.106 kb on - strand, within AO356_08235 at 1847.106 kb on - strand, within AO356_08235 at 1847.115 kb on + strand, within AO356_08235 at 1847.115 kb on + strand, within AO356_08235 at 1847.116 kb on - strand, within AO356_08235 at 1847.116 kb on - strand, within AO356_08235 at 1847.116 kb on - strand, within AO356_08235 at 1847.538 kb on + strand, within AO356_08235 at 1847.538 kb on + strand, within AO356_08235 at 1847.538 kb on + strand, within AO356_08235 at 1847.538 kb on + strand, within AO356_08235 at 1847.538 kb on + strand, within AO356_08235 at 1847.539 kb on - strand, within AO356_08235 at 1847.539 kb on - strand, within AO356_08235 at 1848.164 kb on - strand, within AO356_08235 at 1848.495 kb on + strand, within AO356_08235 at 1848.496 kb on - strand, within AO356_08235 at 1848.498 kb on - strand, within AO356_08235 at 1848.803 kb on - strand at 1848.803 kb on - strand at 1849.242 kb on + strand, within AO356_08240 at 1849.242 kb on + strand, within AO356_08240 at 1849.242 kb on + strand, within AO356_08240 at 1849.242 kb on + strand, within AO356_08240 at 1849.243 kb on - strand, within AO356_08240 at 1849.243 kb on - strand, within AO356_08240 at 1849.243 kb on - strand, within AO356_08240 at 1849.243 kb on - strand, within AO356_08240 at 1849.243 kb on - strand, within AO356_08240 at 1849.316 kb on + strand, within AO356_08240 at 1849.316 kb on + strand, within AO356_08240 at 1849.395 kb on + strand, within AO356_08240 at 1849.501 kb on - strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.518 kb on + strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.519 kb on - strand, within AO356_08240 at 1849.521 kb on + strand, within AO356_08240 at 1849.521 kb on + strand, within AO356_08240 at 1849.521 kb on + strand, within AO356_08240 at 1849.521 kb on + strand, within AO356_08240 at 1849.555 kb on - strand, within AO356_08240 at 1849.581 kb on + strand, within AO356_08240 at 1849.581 kb on + strand, within AO356_08240 at 1849.582 kb on - strand, within AO356_08240 at 1849.582 kb on - strand, within AO356_08240 at 1849.582 kb on - strand, within AO356_08240 at 1849.596 kb on + strand, within AO356_08240 at 1849.596 kb on + strand, within AO356_08240 at 1849.596 kb on + strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.597 kb on - strand, within AO356_08240 at 1849.600 kb on + strand, within AO356_08240 at 1849.600 kb on + strand, within AO356_08240 at 1849.600 kb on + strand, within AO356_08240 at 1849.601 kb on - strand, within AO356_08240 at 1849.645 kb on + strand, within AO356_08240 at 1849.645 kb on + strand, within AO356_08240 at 1849.645 kb on + strand, within AO356_08240 at 1849.730 kb on - strand at 1849.774 kb on - strand at 1849.774 kb on - strand at 1849.838 kb on + strand, within AO356_08245 at 1849.839 kb on - strand, within AO356_08245 at 1849.839 kb on - strand, within AO356_08245 at 1849.881 kb on + strand, within AO356_08245 at 1849.882 kb on - strand, within AO356_08245 at 1849.972 kb on + strand, within AO356_08245 at 1849.972 kb on + strand, within AO356_08245 at 1849.973 kb on - strand, within AO356_08245
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,846,038 + -2.0 1,846,197 + -1.0 1,846,197 + +0.7 1,846,197 + -0.5 1,846,197 + +0.1 1,846,197 + -0.5 1,846,197 + -0.2 1,846,197 + -0.6 1,846,197 + +0.5 1,846,197 + +1.0 1,846,197 + -0.1 1,846,197 + +0.0 1,846,197 + +0.1 1,846,197 + -0.7 1,846,198 - -0.3 1,846,198 - +0.3 1,846,198 - +0.3 1,846,198 - -0.7 1,846,198 - -2.1 1,846,198 - -0.8 1,846,198 - -0.4 1,846,198 - -1.3 1,846,198 - -2.0 1,846,198 - -0.2 1,846,201 + +0.1 1,846,201 + +0.4 1,846,201 + +0.6 1,846,201 + -0.9 1,846,201 + +0.4 1,846,201 + -0.5 1,846,202 - -0.6 1,846,203 + +0.2 1,846,203 + +0.3 1,846,203 + +0.4 1,846,203 + +1.1 1,846,204 - -1.0 1,846,219 + -0.1 1,846,219 + +0.3 1,846,219 + +0.6 1,846,219 + -1.6 1,846,219 + -0.4 1,846,220 - -0.8 1,846,259 - -0.9 1,846,533 + AO356_08235 0.11 -1.6 1,846,533 + AO356_08235 0.11 -1.2 1,846,533 + AO356_08235 0.11 -1.3 1,846,533 + AO356_08235 0.11 -1.6 1,846,533 + AO356_08235 0.11 -0.8 1,846,593 - AO356_08235 0.13 -2.0 1,846,663 - AO356_08235 0.15 -2.7 1,846,699 - AO356_08235 0.17 -1.0 1,846,755 + AO356_08235 0.19 -0.8 1,846,755 + AO356_08235 0.19 -2.8 1,846,755 + AO356_08235 0.19 +0.2 1,846,755 + AO356_08235 0.19 -1.3 1,846,756 - AO356_08235 0.19 +0.2 1,846,756 - AO356_08235 0.19 -1.9 1,846,756 - AO356_08235 0.19 -1.1 1,846,756 - AO356_08235 0.19 -1.1 1,846,756 - AO356_08235 0.19 -0.3 1,846,810 - AO356_08235 0.21 +0.8 1,846,815 + AO356_08235 0.21 -1.8 1,846,815 + AO356_08235 0.21 -0.9 1,846,815 + AO356_08235 0.21 +0.8 1,846,944 + AO356_08235 0.26 -2.6 1,846,944 + AO356_08235 0.26 -0.5 1,847,106 - AO356_08235 0.31 -1.9 1,847,106 - AO356_08235 0.31 -2.4 1,847,115 + AO356_08235 0.32 -1.5 1,847,115 + AO356_08235 0.32 -2.4 1,847,116 - AO356_08235 0.32 -2.2 1,847,116 - AO356_08235 0.32 -1.3 1,847,116 - AO356_08235 0.32 -0.7 1,847,538 + AO356_08235 0.47 -0.2 1,847,538 + AO356_08235 0.47 -0.3 1,847,538 + AO356_08235 0.47 -0.5 1,847,538 + AO356_08235 0.47 +0.1 1,847,538 + AO356_08235 0.47 +0.0 1,847,539 - AO356_08235 0.47 -1.6 1,847,539 - AO356_08235 0.47 -3.4 1,848,164 - AO356_08235 0.69 -0.4 1,848,495 + AO356_08235 0.81 -1.7 1,848,496 - AO356_08235 0.81 -1.0 1,848,498 - AO356_08235 0.82 -2.1 1,848,803 - +0.3 1,848,803 - -2.2 1,849,242 + AO356_08240 0.28 -1.2 1,849,242 + AO356_08240 0.28 +0.4 1,849,242 + AO356_08240 0.28 +0.2 1,849,242 + AO356_08240 0.28 -0.7 1,849,243 - AO356_08240 0.28 -0.3 1,849,243 - AO356_08240 0.28 -0.7 1,849,243 - AO356_08240 0.28 -0.6 1,849,243 - AO356_08240 0.28 -0.7 1,849,243 - AO356_08240 0.28 +0.6 1,849,316 + AO356_08240 0.39 +0.4 1,849,316 + AO356_08240 0.39 +0.2 1,849,395 + AO356_08240 0.51 -0.1 1,849,501 - AO356_08240 0.66 +0.4 1,849,518 + AO356_08240 0.69 +0.5 1,849,518 + AO356_08240 0.69 -0.3 1,849,518 + AO356_08240 0.69 -0.7 1,849,518 + AO356_08240 0.69 -0.3 1,849,518 + AO356_08240 0.69 +0.4 1,849,518 + AO356_08240 0.69 -0.1 1,849,518 + AO356_08240 0.69 +0.1 1,849,518 + AO356_08240 0.69 +1.2 1,849,519 - AO356_08240 0.69 +0.2 1,849,519 - AO356_08240 0.69 -0.3 1,849,519 - AO356_08240 0.69 +0.4 1,849,519 - AO356_08240 0.69 +1.0 1,849,519 - AO356_08240 0.69 +0.2 1,849,519 - AO356_08240 0.69 +0.1 1,849,521 + AO356_08240 0.69 +0.8 1,849,521 + AO356_08240 0.69 +0.1 1,849,521 + AO356_08240 0.69 +0.9 1,849,521 + AO356_08240 0.69 -0.2 1,849,555 - AO356_08240 0.74 +1.8 1,849,581 + AO356_08240 0.78 +0.1 1,849,581 + AO356_08240 0.78 -0.2 1,849,582 - AO356_08240 0.78 +0.8 1,849,582 - AO356_08240 0.78 +0.3 1,849,582 - AO356_08240 0.78 +0.1 1,849,596 + AO356_08240 0.80 -0.5 1,849,596 + AO356_08240 0.80 +0.2 1,849,596 + AO356_08240 0.80 +0.5 1,849,597 - AO356_08240 0.80 +0.4 1,849,597 - AO356_08240 0.80 +0.2 1,849,597 - AO356_08240 0.80 +0.1 1,849,597 - AO356_08240 0.80 -0.2 1,849,597 - AO356_08240 0.80 -0.9 1,849,597 - AO356_08240 0.80 -0.1 1,849,600 + AO356_08240 0.81 +0.3 1,849,600 + AO356_08240 0.81 -1.3 1,849,600 + AO356_08240 0.81 +0.3 1,849,601 - AO356_08240 0.81 -0.2 1,849,645 + AO356_08240 0.88 +0.2 1,849,645 + AO356_08240 0.88 -0.4 1,849,645 + AO356_08240 0.88 -0.6 1,849,730 - -0.0 1,849,774 - -0.1 1,849,774 - -0.6 1,849,838 + AO356_08245 0.15 -0.9 1,849,839 - AO356_08245 0.16 +0.1 1,849,839 - AO356_08245 0.16 +0.7 1,849,881 + AO356_08245 0.21 -0.4 1,849,882 - AO356_08245 0.21 -0.1 1,849,972 + AO356_08245 0.34 +1.0 1,849,972 + AO356_08245 0.34 +0.5 1,849,973 - AO356_08245 0.34 +1.0
Or see this region's nucleotide sequence