Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07195

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07185 and AO356_07190 are separated by 294 nucleotidesAO356_07190 and AO356_07195 are separated by 283 nucleotidesAO356_07195 and AO356_07200 are separated by 277 nucleotides AO356_07185: AO356_07185 - 5-dehydro-4-deoxyglucarate dehydratase, at 1,584,903 to 1,585,814 _07185 AO356_07190: AO356_07190 - hypothetical protein, at 1,586,109 to 1,586,492 _07190 AO356_07195: AO356_07195 - GntR family transcriptional regulator, at 1,586,776 to 1,587,522 _07195 AO356_07200: AO356_07200 - ABC transporter ATP-binding protein, at 1,587,800 to 1,589,527 _07200 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -2 -1 0 1at 1585.815 kb on + strandat 1585.816 kb on - strandat 1585.898 kb on - strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.055 kb on + strandat 1586.055 kb on + strandat 1586.056 kb on - strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.072 kb on - strandat 1586.394 kb on + strand, within AO356_07190at 1586.394 kb on + strand, within AO356_07190at 1586.394 kb on + strand, within AO356_07190at 1586.395 kb on - strand, within AO356_07190at 1586.445 kb on + strand, within AO356_07190at 1586.445 kb on + strand, within AO356_07190at 1586.454 kb on + strandat 1586.455 kb on - strandat 1586.455 kb on - strandat 1586.455 kb on - strandat 1586.490 kb on + strandat 1586.620 kb on - strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.642 kb on - strandat 1586.642 kb on - strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.705 kb on + strandat 1586.891 kb on + strand, within AO356_07195at 1586.891 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1587.020 kb on + strand, within AO356_07195at 1587.409 kb on - strand, within AO356_07195at 1587.562 kb on + strandat 1587.563 kb on - strandat 1587.578 kb on + strandat 1587.579 kb on - strandat 1587.667 kb on + strandat 1587.667 kb on + strandat 1587.667 kb on + strandat 1587.667 kb on + strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.668 kb on - strandat 1587.755 kb on + strandat 1587.755 kb on + strandat 1587.756 kb on - strandat 1587.756 kb on - strandat 1587.756 kb on - strandat 1587.756 kb on - strandat 1587.801 kb on + strandat 1587.801 kb on + strandat 1587.801 kb on + strandat 1587.802 kb on - strandat 1587.802 kb on - strandat 1587.802 kb on - strandat 1587.802 kb on - strandat 1587.802 kb on - strandat 1587.802 kb on - strandat 1587.933 kb on + strandat 1587.933 kb on + strandat 1587.933 kb on + strandat 1587.934 kb on - strandat 1587.934 kb on - strandat 1587.984 kb on + strand, within AO356_07200at 1587.984 kb on + strand, within AO356_07200at 1587.984 kb on + strand, within AO356_07200at 1587.984 kb on + strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1587.985 kb on - strand, within AO356_07200at 1588.003 kb on - strand, within AO356_07200at 1588.128 kb on + strand, within AO356_07200at 1588.129 kb on - strand, within AO356_07200at 1588.200 kb on + strand, within AO356_07200at 1588.200 kb on + strand, within AO356_07200at 1588.201 kb on - strand, within AO356_07200at 1588.201 kb on - strand, within AO356_07200at 1588.201 kb on - strand, within AO356_07200at 1588.225 kb on - strand, within AO356_07200at 1588.355 kb on - strand, within AO356_07200at 1588.405 kb on + strand, within AO356_07200at 1588.405 kb on + strand, within AO356_07200at 1588.405 kb on + strand, within AO356_07200

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,585,815 + -0.6
1,585,816 - -0.4
1,585,898 - -0.2
1,586,051 + +0.1
1,586,051 + +0.3
1,586,051 + -1.0
1,586,051 + +0.4
1,586,051 + +1.0
1,586,051 + -0.2
1,586,052 - -0.3
1,586,052 - -0.4
1,586,052 - +0.5
1,586,052 - +0.1
1,586,052 - +0.7
1,586,052 - +0.2
1,586,052 - +0.2
1,586,052 - -0.4
1,586,052 - -0.7
1,586,055 + -0.6
1,586,055 + +0.2
1,586,056 - +0.8
1,586,071 + -0.4
1,586,071 + +0.2
1,586,071 + -0.2
1,586,071 + +0.0
1,586,071 + +1.2
1,586,072 - +1.2
1,586,394 + AO356_07190 0.74 +0.2
1,586,394 + AO356_07190 0.74 -1.1
1,586,394 + AO356_07190 0.74 -0.6
1,586,395 - AO356_07190 0.74 +0.0
1,586,445 + AO356_07190 0.88 +0.6
1,586,445 + AO356_07190 0.88 +0.9
1,586,454 + +0.4
1,586,455 - +0.7
1,586,455 - +1.2
1,586,455 - +0.8
1,586,490 + -0.9
1,586,620 - -1.0
1,586,637 + +0.3
1,586,637 + -0.9
1,586,637 + +0.4
1,586,637 + +0.7
1,586,637 + +0.5
1,586,637 + +0.5
1,586,637 + -0.3
1,586,637 + -1.6
1,586,638 - -0.2
1,586,638 - -1.0
1,586,638 - -0.3
1,586,638 - +0.1
1,586,638 - +0.2
1,586,641 + -0.3
1,586,641 + -1.1
1,586,641 + +0.3
1,586,641 + -0.3
1,586,641 + -0.0
1,586,642 - +0.4
1,586,642 - -0.1
1,586,643 + +1.4
1,586,643 + +0.7
1,586,643 + +0.0
1,586,643 + +0.9
1,586,643 + +0.2
1,586,643 + +0.5
1,586,643 + -0.0
1,586,644 - +0.6
1,586,644 - -1.0
1,586,644 - -0.4
1,586,644 - +0.6
1,586,705 + -0.4
1,586,891 + AO356_07195 0.15 -2.1
1,586,891 + AO356_07195 0.15 -1.2
1,586,927 + AO356_07195 0.20 -1.6
1,586,927 + AO356_07195 0.20 -1.5
1,586,927 + AO356_07195 0.20 -1.2
1,586,927 + AO356_07195 0.20 -1.1
1,586,927 + AO356_07195 0.20 -2.7
1,586,927 + AO356_07195 0.20 -1.0
1,586,927 + AO356_07195 0.20 -1.3
1,586,927 + AO356_07195 0.20 -0.9
1,586,927 + AO356_07195 0.20 -0.7
1,586,927 + AO356_07195 0.20 -1.6
1,586,927 + AO356_07195 0.20 -1.6
1,586,927 + AO356_07195 0.20 -0.8
1,586,928 - AO356_07195 0.20 +0.8
1,586,928 - AO356_07195 0.20 +0.9
1,586,928 - AO356_07195 0.20 -0.7
1,586,928 - AO356_07195 0.20 -0.2
1,587,020 + AO356_07195 0.33 -1.3
1,587,409 - AO356_07195 0.85 -1.2
1,587,562 + +0.1
1,587,563 - -0.1
1,587,578 + -0.2
1,587,579 - -1.6
1,587,667 + -0.4
1,587,667 + +0.6
1,587,667 + +1.4
1,587,667 + -0.3
1,587,668 - -0.0
1,587,668 - +0.3
1,587,668 - +0.2
1,587,668 - -0.9
1,587,668 - +1.2
1,587,668 - -0.9
1,587,668 - -0.6
1,587,668 - -0.7
1,587,668 - +1.3
1,587,755 + +0.2
1,587,755 + +0.5
1,587,756 - +0.1
1,587,756 - +0.1
1,587,756 - -0.9
1,587,756 - +0.6
1,587,801 + -0.2
1,587,801 + +0.4
1,587,801 + -0.1
1,587,802 - +0.4
1,587,802 - -0.2
1,587,802 - -0.0
1,587,802 - -0.6
1,587,802 - -0.2
1,587,802 - -0.8
1,587,933 + -0.7
1,587,933 + +0.1
1,587,933 + +0.2
1,587,934 - +0.7
1,587,934 - +0.5
1,587,984 + AO356_07200 0.11 +0.7
1,587,984 + AO356_07200 0.11 +0.4
1,587,984 + AO356_07200 0.11 +0.3
1,587,984 + AO356_07200 0.11 +1.1
1,587,985 - AO356_07200 0.11 -0.4
1,587,985 - AO356_07200 0.11 -1.8
1,587,985 - AO356_07200 0.11 +0.1
1,587,985 - AO356_07200 0.11 -0.1
1,587,985 - AO356_07200 0.11 +0.0
1,587,985 - AO356_07200 0.11 +0.3
1,587,985 - AO356_07200 0.11 +0.2
1,587,985 - AO356_07200 0.11 +0.0
1,587,985 - AO356_07200 0.11 -0.1
1,587,985 - AO356_07200 0.11 +0.1
1,588,003 - AO356_07200 0.12 +0.3
1,588,128 + AO356_07200 0.19 +0.6
1,588,129 - AO356_07200 0.19 -0.7
1,588,200 + AO356_07200 0.23 +0.5
1,588,200 + AO356_07200 0.23 -0.0
1,588,201 - AO356_07200 0.23 +0.7
1,588,201 - AO356_07200 0.23 -0.3
1,588,201 - AO356_07200 0.23 +0.5
1,588,225 - AO356_07200 0.25 +0.4
1,588,355 - AO356_07200 0.32 +0.0
1,588,405 + AO356_07200 0.35 -0.7
1,588,405 + AO356_07200 0.35 +0.7
1,588,405 + AO356_07200 0.35 +0.2

Or see this region's nucleotide sequence