Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05625

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05620 and AO356_05625 are separated by 203 nucleotidesAO356_05625 and AO356_05630 are separated by 121 nucleotides AO356_05620: AO356_05620 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 1,259,502 to 1,260,200 _05620 AO356_05625: AO356_05625 - ferredoxin-NADP reductase, at 1,260,404 to 1,261,183 _05625 AO356_05630: AO356_05630 - LysR family transcriptional regulator, at 1,261,305 to 1,262,231 _05630 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -2 -1 0 1at 1259.508 kb on + strandat 1259.508 kb on + strandat 1259.508 kb on + strandat 1259.508 kb on + strandat 1259.508 kb on + strandat 1259.509 kb on - strandat 1259.509 kb on - strandat 1259.509 kb on - strandat 1259.509 kb on - strandat 1259.898 kb on + strand, within AO356_05620at 1259.898 kb on + strand, within AO356_05620at 1259.898 kb on + strand, within AO356_05620at 1259.898 kb on + strand, within AO356_05620at 1259.899 kb on - strand, within AO356_05620at 1259.908 kb on - strand, within AO356_05620at 1260.081 kb on + strand, within AO356_05620at 1260.081 kb on + strand, within AO356_05620at 1260.109 kb on - strand, within AO356_05620at 1260.109 kb on - strand, within AO356_05620at 1260.109 kb on - strand, within AO356_05620at 1260.198 kb on + strandat 1260.198 kb on + strandat 1260.199 kb on - strandat 1260.199 kb on - strandat 1260.233 kb on - strandat 1260.254 kb on + strandat 1260.254 kb on + strandat 1260.254 kb on + strandat 1260.254 kb on + strandat 1260.255 kb on - strandat 1260.255 kb on - strandat 1260.385 kb on + strandat 1260.385 kb on + strandat 1260.385 kb on + strandat 1260.386 kb on - strandat 1260.386 kb on - strandat 1260.386 kb on - strandat 1260.386 kb on - strandat 1260.386 kb on - strandat 1260.386 kb on - strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.405 kb on + strandat 1260.406 kb on - strandat 1260.406 kb on - strandat 1260.406 kb on - strandat 1261.259 kb on - strandat 1261.278 kb on - strandat 1261.314 kb on - strandat 1261.319 kb on - strandat 1261.720 kb on - strand, within AO356_05630at 1262.109 kb on + strand, within AO356_05630at 1262.109 kb on + strand, within AO356_05630at 1262.109 kb on + strand, within AO356_05630at 1262.110 kb on - strand, within AO356_05630at 1262.110 kb on - strand, within AO356_05630at 1262.133 kb on + strand, within AO356_05630at 1262.134 kb on - strand, within AO356_05630

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,259,508 + -0.4
1,259,508 + -0.0
1,259,508 + -0.2
1,259,508 + +0.4
1,259,508 + -0.3
1,259,509 - -0.9
1,259,509 - +1.6
1,259,509 - -1.1
1,259,509 - -0.7
1,259,898 + AO356_05620 0.57 -0.3
1,259,898 + AO356_05620 0.57 -0.6
1,259,898 + AO356_05620 0.57 -0.2
1,259,898 + AO356_05620 0.57 +0.3
1,259,899 - AO356_05620 0.57 +0.5
1,259,908 - AO356_05620 0.58 +0.1
1,260,081 + AO356_05620 0.83 +0.0
1,260,081 + AO356_05620 0.83 +1.0
1,260,109 - AO356_05620 0.87 +0.2
1,260,109 - AO356_05620 0.87 +0.5
1,260,109 - AO356_05620 0.87 +0.4
1,260,198 + +0.5
1,260,198 + +0.5
1,260,199 - +0.4
1,260,199 - +1.0
1,260,233 - -0.7
1,260,254 + -0.1
1,260,254 + -1.4
1,260,254 + -0.1
1,260,254 + +0.3
1,260,255 - +0.4
1,260,255 - -0.0
1,260,385 + +0.8
1,260,385 + -0.5
1,260,385 + +0.1
1,260,386 - +0.1
1,260,386 - +1.1
1,260,386 - -0.0
1,260,386 - +0.9
1,260,386 - +0.5
1,260,386 - +0.1
1,260,405 + +0.5
1,260,405 + +0.9
1,260,405 + +0.9
1,260,405 + +0.7
1,260,405 + -0.7
1,260,405 + -0.1
1,260,405 + +1.2
1,260,406 - +1.0
1,260,406 - -0.6
1,260,406 - +0.5
1,261,259 - +0.5
1,261,278 - +0.1
1,261,314 - +1.0
1,261,319 - -0.5
1,261,720 - AO356_05630 0.45 +0.5
1,262,109 + AO356_05630 0.87 -1.6
1,262,109 + AO356_05630 0.87 -1.3
1,262,109 + AO356_05630 0.87 -1.6
1,262,110 - AO356_05630 0.87 -0.8
1,262,110 - AO356_05630 0.87 -0.4
1,262,133 + AO356_05630 0.89 -1.8
1,262,134 - AO356_05630 0.89 -1.7

Or see this region's nucleotide sequence