Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01620 and AO356_01625 are separated by 168 nucleotides AO356_01625 and AO356_01630 overlap by 4 nucleotides AO356_01630 and AO356_01635 are separated by 134 nucleotides
AO356_01620: AO356_01620 - catalase, at 365,660 to 366,742
_01620
AO356_01625: AO356_01625 - RNA polymerase subunit sigma-24, at 366,911 to 367,417
_01625
AO356_01630: AO356_01630 - anti-sigma factor, at 367,414 to 368,166
_01630
AO356_01635: AO356_01635 - IclR family transcriptional regulator, at 368,301 to 369,137
_01635
Position (kb) 366
367
368 Strain fitness (log2 ratio) -2
-1
0
1 at 366.050 kb on + strand, within AO356_01620 at 366.051 kb on - strand, within AO356_01620 at 366.100 kb on - strand, within AO356_01620 at 366.118 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.121 kb on - strand, within AO356_01620 at 366.121 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.273 kb on + strand, within AO356_01620 at 366.273 kb on + strand, within AO356_01620 at 366.474 kb on + strand, within AO356_01620 at 366.504 kb on + strand, within AO356_01620 at 366.505 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.810 kb on - strand at 366.824 kb on + strand at 366.828 kb on + strand at 366.828 kb on + strand at 366.847 kb on + strand at 366.848 kb on - strand at 366.894 kb on + strand at 366.895 kb on - strand at 366.903 kb on + strand at 366.904 kb on - strand at 367.286 kb on + strand, within AO356_01625 at 367.286 kb on + strand, within AO356_01625 at 367.286 kb on + strand, within AO356_01625 at 367.287 kb on - strand, within AO356_01625 at 367.453 kb on + strand at 367.501 kb on + strand, within AO356_01630 at 367.501 kb on + strand, within AO356_01630 at 367.501 kb on + strand, within AO356_01630 at 367.502 kb on - strand, within AO356_01630 at 367.819 kb on + strand, within AO356_01630 at 367.864 kb on + strand, within AO356_01630 at 367.969 kb on + strand, within AO356_01630 at 367.969 kb on + strand, within AO356_01630 at 368.002 kb on + strand, within AO356_01630 at 368.002 kb on + strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.077 kb on + strand, within AO356_01630 at 368.095 kb on + strand at 368.095 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.115 kb on - strand at 368.145 kb on + strand at 368.146 kb on - strand at 368.146 kb on - strand at 368.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 366,050 + AO356_01620 0.36 +0.8 366,051 - AO356_01620 0.36 -0.1 366,100 - AO356_01620 0.41 -1.3 366,118 + AO356_01620 0.42 +0.6 366,120 + AO356_01620 0.42 +0.3 366,120 + AO356_01620 0.42 -0.3 366,120 + AO356_01620 0.42 -0.7 366,121 - AO356_01620 0.43 +0.4 366,121 - AO356_01620 0.43 -0.0 366,136 - AO356_01620 0.44 +0.1 366,136 - AO356_01620 0.44 +0.1 366,136 - AO356_01620 0.44 +0.6 366,136 - AO356_01620 0.44 +0.9 366,273 + AO356_01620 0.57 -0.8 366,273 + AO356_01620 0.57 -0.2 366,474 + AO356_01620 0.75 -0.2 366,504 + AO356_01620 0.78 -0.1 366,505 - AO356_01620 0.78 +0.6 366,631 - AO356_01620 0.90 +0.1 366,631 - AO356_01620 0.90 -0.7 366,631 - AO356_01620 0.90 +0.3 366,810 - +0.3 366,824 + +0.6 366,828 + +0.8 366,828 + -0.7 366,847 + +0.8 366,848 - +0.1 366,894 + -0.0 366,895 - -0.0 366,903 + +0.4 366,904 - +0.4 367,286 + AO356_01625 0.74 -1.2 367,286 + AO356_01625 0.74 -0.4 367,286 + AO356_01625 0.74 -1.4 367,287 - AO356_01625 0.74 +1.5 367,453 + +0.5 367,501 + AO356_01630 0.12 -0.2 367,501 + AO356_01630 0.12 +0.0 367,501 + AO356_01630 0.12 -0.0 367,502 - AO356_01630 0.12 -0.6 367,819 + AO356_01630 0.54 +0.1 367,864 + AO356_01630 0.60 -0.7 367,969 + AO356_01630 0.74 +0.0 367,969 + AO356_01630 0.74 +0.1 368,002 + AO356_01630 0.78 -0.9 368,002 + AO356_01630 0.78 +0.6 368,003 - AO356_01630 0.78 -1.1 368,003 - AO356_01630 0.78 -0.6 368,003 - AO356_01630 0.78 +0.5 368,003 - AO356_01630 0.78 -0.1 368,077 + AO356_01630 0.88 -0.4 368,095 + -0.5 368,095 + -0.1 368,101 + +0.9 368,101 + -0.7 368,101 + -1.0 368,101 + -0.3 368,101 + -0.3 368,102 - -0.6 368,102 - +0.3 368,102 - -2.2 368,102 - +0.7 368,115 - -1.5 368,145 + +0.3 368,146 - +0.2 368,146 - -0.5 368,146 - +0.7
Or see this region's nucleotide sequence