Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00530

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00520 and AO356_00525 overlap by 4 nucleotidesAO356_00525 and AO356_00530 are separated by 77 nucleotidesAO356_00530 and AO356_00535 are separated by 180 nucleotidesAO356_00535 and AO356_00540 are separated by 115 nucleotides AO356_00520: AO356_00520 - cobalt transporter, at 109,994 to 110,689 _00520 AO356_00525: AO356_00525 - cobalamin biosynthesis protein CobE, at 110,686 to 111,090 _00525 AO356_00530: AO356_00530 - precorrin-4 C11-methyltransferase, at 111,168 to 111,914 _00530 AO356_00535: AO356_00535 - Fe/S biogenesis protein NfuA, at 112,095 to 112,679 _00535 AO356_00540: AO356_00540 - peptidylprolyl isomerase, at 112,795 to 115,086 _00540 Position (kb) 111 112Strain fitness (log2 ratio) -2 -1 0 1at 110.270 kb on + strand, within AO356_00520at 110.271 kb on - strand, within AO356_00520at 110.271 kb on - strand, within AO356_00520at 110.805 kb on - strand, within AO356_00525at 110.820 kb on + strand, within AO356_00525at 111.177 kb on + strandat 111.177 kb on + strandat 111.178 kb on - strandat 111.178 kb on - strandat 111.261 kb on + strand, within AO356_00530at 111.262 kb on - strand, within AO356_00530at 111.262 kb on - strand, within AO356_00530at 111.584 kb on + strand, within AO356_00530at 111.585 kb on - strand, within AO356_00530at 111.782 kb on + strand, within AO356_00530at 111.782 kb on + strand, within AO356_00530at 111.879 kb on + strandat 111.944 kb on - strandat 111.944 kb on - strandat 111.945 kb on + strandat 111.946 kb on - strandat 111.946 kb on - strandat 111.998 kb on - strandat 112.056 kb on + strandat 112.056 kb on + strandat 112.099 kb on + strandat 112.099 kb on + strandat 112.099 kb on + strandat 112.100 kb on - strandat 112.102 kb on + strandat 112.102 kb on + strandat 112.102 kb on + strandat 112.121 kb on + strandat 112.122 kb on - strandat 112.160 kb on + strand, within AO356_00535at 112.642 kb on + strandat 112.859 kb on + strandat 112.860 kb on - strandat 112.860 kb on - strandat 112.860 kb on - strandat 112.860 kb on - strandat 112.860 kb on - strandat 112.860 kb on - strandat 112.880 kb on + strandat 112.880 kb on + strandat 112.881 kb on - strandat 112.881 kb on - strandat 112.881 kb on - strandat 112.881 kb on - strandat 112.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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110,270 + AO356_00520 0.40 -0.2
110,271 - AO356_00520 0.40 -0.7
110,271 - AO356_00520 0.40 -1.1
110,805 - AO356_00525 0.29 -0.9
110,820 + AO356_00525 0.33 -0.8
111,177 + -1.4
111,177 + -0.9
111,178 - +0.8
111,178 - -1.1
111,261 + AO356_00530 0.12 -2.1
111,262 - AO356_00530 0.13 -0.1
111,262 - AO356_00530 0.13 -0.4
111,584 + AO356_00530 0.56 -0.4
111,585 - AO356_00530 0.56 -0.4
111,782 + AO356_00530 0.82 -1.4
111,782 + AO356_00530 0.82 -1.2
111,879 + -0.6
111,944 - -0.1
111,944 - -0.6
111,945 + -0.3
111,946 - +0.8
111,946 - -0.3
111,998 - -0.1
112,056 + +0.6
112,056 + +0.6
112,099 + +0.3
112,099 + -0.4
112,099 + +0.7
112,100 - -0.2
112,102 + +0.1
112,102 + +0.7
112,102 + +1.0
112,121 + -1.7
112,122 - +0.9
112,160 + AO356_00535 0.11 -1.3
112,642 + -0.6
112,859 + +1.1
112,860 - -0.7
112,860 - +0.9
112,860 - +0.1
112,860 - +0.8
112,860 - +0.0
112,860 - +0.4
112,880 + +0.2
112,880 + +0.1
112,881 - +0.3
112,881 - +0.3
112,881 - +0.3
112,881 - +0.1
112,881 - -0.8

Or see this region's nucleotide sequence