Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00520 and AO356_00525 overlap by 4 nucleotides AO356_00525 and AO356_00530 are separated by 77 nucleotides AO356_00530 and AO356_00535 are separated by 180 nucleotides AO356_00535 and AO356_00540 are separated by 115 nucleotides
AO356_00520: AO356_00520 - cobalt transporter, at 109,994 to 110,689
_00520
AO356_00525: AO356_00525 - cobalamin biosynthesis protein CobE, at 110,686 to 111,090
_00525
AO356_00530: AO356_00530 - precorrin-4 C11-methyltransferase, at 111,168 to 111,914
_00530
AO356_00535: AO356_00535 - Fe/S biogenesis protein NfuA, at 112,095 to 112,679
_00535
AO356_00540: AO356_00540 - peptidylprolyl isomerase, at 112,795 to 115,086
_00540
Position (kb)
111
112 Strain fitness (log2 ratio)
-2
-1
0
1 at 110.270 kb on + strand, within AO356_00520 at 110.271 kb on - strand, within AO356_00520 at 110.271 kb on - strand, within AO356_00520 at 110.805 kb on - strand, within AO356_00525 at 110.820 kb on + strand, within AO356_00525 at 111.177 kb on + strand at 111.177 kb on + strand at 111.178 kb on - strand at 111.178 kb on - strand at 111.261 kb on + strand, within AO356_00530 at 111.262 kb on - strand, within AO356_00530 at 111.262 kb on - strand, within AO356_00530 at 111.584 kb on + strand, within AO356_00530 at 111.585 kb on - strand, within AO356_00530 at 111.782 kb on + strand, within AO356_00530 at 111.782 kb on + strand, within AO356_00530 at 111.879 kb on + strand at 111.944 kb on - strand at 111.944 kb on - strand at 111.945 kb on + strand at 111.946 kb on - strand at 111.946 kb on - strand at 111.998 kb on - strand at 112.056 kb on + strand at 112.056 kb on + strand at 112.099 kb on + strand at 112.099 kb on + strand at 112.099 kb on + strand at 112.100 kb on - strand at 112.102 kb on + strand at 112.102 kb on + strand at 112.102 kb on + strand at 112.121 kb on + strand at 112.122 kb on - strand at 112.160 kb on + strand, within AO356_00535 at 112.642 kb on + strand at 112.859 kb on + strand at 112.860 kb on - strand at 112.860 kb on - strand at 112.860 kb on - strand at 112.860 kb on - strand at 112.860 kb on - strand at 112.860 kb on - strand at 112.880 kb on + strand at 112.880 kb on + strand at 112.881 kb on - strand at 112.881 kb on - strand at 112.881 kb on - strand at 112.881 kb on - strand at 112.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 110,270 + AO356_00520 0.40 -0.2 110,271 - AO356_00520 0.40 -0.7 110,271 - AO356_00520 0.40 -1.1 110,805 - AO356_00525 0.29 -0.9 110,820 + AO356_00525 0.33 -0.8 111,177 + -1.4 111,177 + -0.9 111,178 - +0.8 111,178 - -1.1 111,261 + AO356_00530 0.12 -2.1 111,262 - AO356_00530 0.13 -0.1 111,262 - AO356_00530 0.13 -0.4 111,584 + AO356_00530 0.56 -0.4 111,585 - AO356_00530 0.56 -0.4 111,782 + AO356_00530 0.82 -1.4 111,782 + AO356_00530 0.82 -1.2 111,879 + -0.6 111,944 - -0.1 111,944 - -0.6 111,945 + -0.3 111,946 - +0.8 111,946 - -0.3 111,998 - -0.1 112,056 + +0.6 112,056 + +0.6 112,099 + +0.3 112,099 + -0.4 112,099 + +0.7 112,100 - -0.2 112,102 + +0.1 112,102 + +0.7 112,102 + +1.0 112,121 + -1.7 112,122 - +0.9 112,160 + AO356_00535 0.11 -1.3 112,642 + -0.6 112,859 + +1.1 112,860 - -0.7 112,860 - +0.9 112,860 - +0.1 112,860 - +0.8 112,860 - +0.0 112,860 - +0.4 112,880 + +0.2 112,880 + +0.1 112,881 - +0.3 112,881 - +0.3 112,881 - +0.3 112,881 - +0.1 112,881 - -0.8
Or see this region's nucleotide sequence