Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36555

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36550 and RR42_RS36555 are separated by 88 nucleotidesRR42_RS36555 and RR42_RS36560 are separated by 101 nucleotides RR42_RS36550: RR42_RS36550 - 3-hydroxyacyl-CoA dehydrogenase, at 3,655,370 to 3,656,284 _RS36550 RR42_RS36555: RR42_RS36555 - MFS transporter, at 3,656,373 to 3,657,374 _RS36555 RR42_RS36560: RR42_RS36560 - ABC transporter substrate-binding protein, at 3,657,476 to 3,658,468 _RS36560 Position (kb) 3656 3657 3658Strain fitness (log2 ratio) -1 0 1at 3655.791 kb on + strand, within RR42_RS36550at 3655.792 kb on - strand, within RR42_RS36550at 3656.064 kb on - strand, within RR42_RS36550at 3656.118 kb on - strand, within RR42_RS36550at 3656.259 kb on - strandat 3656.290 kb on + strandat 3656.291 kb on - strandat 3656.300 kb on + strandat 3656.435 kb on + strandat 3656.476 kb on + strand, within RR42_RS36555at 3656.590 kb on + strand, within RR42_RS36555at 3656.590 kb on + strand, within RR42_RS36555at 3656.709 kb on - strand, within RR42_RS36555at 3657.897 kb on + strand, within RR42_RS36560at 3657.898 kb on - strand, within RR42_RS36560at 3657.898 kb on - strand, within RR42_RS36560at 3658.135 kb on - strand, within RR42_RS36560at 3658.143 kb on + strand, within RR42_RS36560at 3658.143 kb on + strand, within RR42_RS36560

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,655,791 + RR42_RS36550 0.46 -0.5
3,655,792 - RR42_RS36550 0.46 -0.0
3,656,064 - RR42_RS36550 0.76 -0.6
3,656,118 - RR42_RS36550 0.82 -0.3
3,656,259 - -0.3
3,656,290 + +0.8
3,656,291 - +0.4
3,656,300 + -0.1
3,656,435 + -0.3
3,656,476 + RR42_RS36555 0.10 +1.0
3,656,590 + RR42_RS36555 0.22 +0.0
3,656,590 + RR42_RS36555 0.22 +1.0
3,656,709 - RR42_RS36555 0.34 +0.3
3,657,897 + RR42_RS36560 0.42 +0.4
3,657,898 - RR42_RS36560 0.42 -0.4
3,657,898 - RR42_RS36560 0.42 +0.2
3,658,135 - RR42_RS36560 0.66 -0.1
3,658,143 + RR42_RS36560 0.67 +0.0
3,658,143 + RR42_RS36560 0.67 +1.0

Or see this region's nucleotide sequence