Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28065 and RR42_RS28070 are separated by 35 nucleotides RR42_RS28070 and RR42_RS28075 are separated by 26 nucleotides RR42_RS28075 and RR42_RS28080 are separated by 93 nucleotides
RR42_RS28065: RR42_RS28065 - ribose-phosphate pyrophosphokinase, at 1,657,620 to 1,658,225
_RS28065
RR42_RS28070: RR42_RS28070 - hypothetical protein, at 1,658,261 to 1,659,022
_RS28070
RR42_RS28075: RR42_RS28075 - phosphonate metabolism protein PhnM, at 1,659,049 to 1,660,245
_RS28075
RR42_RS28080: RR42_RS28080 - GntR family transcriptional regulator, at 1,660,339 to 1,661,073
_RS28080
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-2
-1
0
1 at 1658.179 kb on + strand at 1658.322 kb on + strand at 1658.491 kb on + strand, within RR42_RS28070 at 1658.509 kb on - strand, within RR42_RS28070 at 1658.509 kb on - strand, within RR42_RS28070 at 1658.533 kb on + strand, within RR42_RS28070 at 1658.534 kb on - strand, within RR42_RS28070 at 1658.714 kb on + strand, within RR42_RS28070 at 1658.833 kb on - strand, within RR42_RS28070 at 1658.979 kb on + strand at 1658.979 kb on + strand at 1658.994 kb on + strand at 1658.995 kb on - strand at 1659.326 kb on + strand, within RR42_RS28075 at 1659.329 kb on + strand, within RR42_RS28075 at 1659.516 kb on - strand, within RR42_RS28075 at 1659.897 kb on - strand, within RR42_RS28075 at 1659.928 kb on + strand, within RR42_RS28075 at 1660.005 kb on - strand, within RR42_RS28075 at 1660.286 kb on - strand at 1660.303 kb on - strand at 1660.540 kb on - strand, within RR42_RS28080 at 1660.917 kb on + strand, within RR42_RS28080 at 1660.982 kb on + strand, within RR42_RS28080 at 1660.983 kb on - strand, within RR42_RS28080 at 1661.122 kb on + strand at 1661.123 kb on - strand at 1661.213 kb on - strand at 1661.230 kb on + strand at 1661.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 1,658,179 + -0.6 1,658,322 + -0.3 1,658,491 + RR42_RS28070 0.30 -0.6 1,658,509 - RR42_RS28070 0.33 -0.2 1,658,509 - RR42_RS28070 0.33 +0.3 1,658,533 + RR42_RS28070 0.36 +0.7 1,658,534 - RR42_RS28070 0.36 +1.1 1,658,714 + RR42_RS28070 0.59 +0.1 1,658,833 - RR42_RS28070 0.75 +0.0 1,658,979 + +0.2 1,658,979 + +0.3 1,658,994 + -0.7 1,658,995 - +0.6 1,659,326 + RR42_RS28075 0.23 +0.5 1,659,329 + RR42_RS28075 0.23 +0.9 1,659,516 - RR42_RS28075 0.39 +0.6 1,659,897 - RR42_RS28075 0.71 +1.0 1,659,928 + RR42_RS28075 0.73 +1.0 1,660,005 - RR42_RS28075 0.80 -0.9 1,660,286 - -0.5 1,660,303 - -0.1 1,660,540 - RR42_RS28080 0.27 +1.3 1,660,917 + RR42_RS28080 0.79 -0.4 1,660,982 + RR42_RS28080 0.87 -1.9 1,660,983 - RR42_RS28080 0.88 +0.3 1,661,122 + -0.7 1,661,123 - +1.1 1,661,213 - +0.3 1,661,230 + +1.0 1,661,235 + +0.7
Or see this region's nucleotide sequence