Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28075

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28065 and RR42_RS28070 are separated by 35 nucleotidesRR42_RS28070 and RR42_RS28075 are separated by 26 nucleotidesRR42_RS28075 and RR42_RS28080 are separated by 93 nucleotides RR42_RS28065: RR42_RS28065 - ribose-phosphate pyrophosphokinase, at 1,657,620 to 1,658,225 _RS28065 RR42_RS28070: RR42_RS28070 - hypothetical protein, at 1,658,261 to 1,659,022 _RS28070 RR42_RS28075: RR42_RS28075 - phosphonate metabolism protein PhnM, at 1,659,049 to 1,660,245 _RS28075 RR42_RS28080: RR42_RS28080 - GntR family transcriptional regulator, at 1,660,339 to 1,661,073 _RS28080 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -2 -1 0 1at 1658.179 kb on + strandat 1658.322 kb on + strandat 1658.491 kb on + strand, within RR42_RS28070at 1658.509 kb on - strand, within RR42_RS28070at 1658.509 kb on - strand, within RR42_RS28070at 1658.533 kb on + strand, within RR42_RS28070at 1658.534 kb on - strand, within RR42_RS28070at 1658.714 kb on + strand, within RR42_RS28070at 1658.833 kb on - strand, within RR42_RS28070at 1658.979 kb on + strandat 1658.979 kb on + strandat 1658.994 kb on + strandat 1658.995 kb on - strandat 1659.326 kb on + strand, within RR42_RS28075at 1659.329 kb on + strand, within RR42_RS28075at 1659.516 kb on - strand, within RR42_RS28075at 1659.897 kb on - strand, within RR42_RS28075at 1659.928 kb on + strand, within RR42_RS28075at 1660.005 kb on - strand, within RR42_RS28075at 1660.286 kb on - strandat 1660.303 kb on - strandat 1660.540 kb on - strand, within RR42_RS28080at 1660.917 kb on + strand, within RR42_RS28080at 1660.982 kb on + strand, within RR42_RS28080at 1660.983 kb on - strand, within RR42_RS28080at 1661.122 kb on + strandat 1661.123 kb on - strandat 1661.213 kb on - strandat 1661.230 kb on + strandat 1661.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,658,179 + -0.6
1,658,322 + -0.3
1,658,491 + RR42_RS28070 0.30 -0.6
1,658,509 - RR42_RS28070 0.33 -0.2
1,658,509 - RR42_RS28070 0.33 +0.3
1,658,533 + RR42_RS28070 0.36 +0.7
1,658,534 - RR42_RS28070 0.36 +1.1
1,658,714 + RR42_RS28070 0.59 +0.1
1,658,833 - RR42_RS28070 0.75 +0.0
1,658,979 + +0.2
1,658,979 + +0.3
1,658,994 + -0.7
1,658,995 - +0.6
1,659,326 + RR42_RS28075 0.23 +0.5
1,659,329 + RR42_RS28075 0.23 +0.9
1,659,516 - RR42_RS28075 0.39 +0.6
1,659,897 - RR42_RS28075 0.71 +1.0
1,659,928 + RR42_RS28075 0.73 +1.0
1,660,005 - RR42_RS28075 0.80 -0.9
1,660,286 - -0.5
1,660,303 - -0.1
1,660,540 - RR42_RS28080 0.27 +1.3
1,660,917 + RR42_RS28080 0.79 -0.4
1,660,982 + RR42_RS28080 0.87 -1.9
1,660,983 - RR42_RS28080 0.88 +0.3
1,661,122 + -0.7
1,661,123 - +1.1
1,661,213 - +0.3
1,661,230 + +1.0
1,661,235 + +0.7

Or see this region's nucleotide sequence