Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28045

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28040 and RR42_RS28045 are separated by 146 nucleotidesRR42_RS28045 and RR42_RS28050 overlap by 8 nucleotidesRR42_RS28050 and RR42_RS28055 are separated by 38 nucleotides RR42_RS28040: RR42_RS28040 - acyl-CoA synthetase, at 1,651,338 to 1,653,443 _RS28040 RR42_RS28045: RR42_RS28045 - 3-oxoacyl-ACP reductase, at 1,653,590 to 1,654,339 _RS28045 RR42_RS28050: RR42_RS28050 - 3-hydroxypropionyl-CoA dehydratase, at 1,654,332 to 1,655,114 _RS28050 RR42_RS28055: RR42_RS28055 - acetyl-CoA acetyltransferase, at 1,655,153 to 1,656,349 _RS28055 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -1 0 1at 1653.063 kb on - strand, within RR42_RS28040at 1653.884 kb on + strand, within RR42_RS28045at 1654.184 kb on + strand, within RR42_RS28045at 1654.297 kb on + strandat 1655.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,653,063 - RR42_RS28040 0.82 -0.1
1,653,884 + RR42_RS28045 0.39 +0.3
1,654,184 + RR42_RS28045 0.79 +0.6
1,654,297 + -1.5
1,655,246 - -1.5

Or see this region's nucleotide sequence