Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24480 and RR42_RS24485 are separated by 182 nucleotides RR42_RS24485 and RR42_RS24490 are separated by 60 nucleotides RR42_RS24490 and RR42_RS24495 are separated by 487 nucleotides
RR42_RS24480: RR42_RS24480 - hypothetical protein, at 826,679 to 827,011
_RS24480
RR42_RS24485: RR42_RS24485 - hypothetical protein, at 827,194 to 827,631
_RS24485
RR42_RS24490: RR42_RS24490 - hypothetical protein, at 827,692 to 828,036
_RS24490
RR42_RS24495: RR42_RS24495 - hypothetical protein, at 828,524 to 829,540
_RS24495
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.719 kb on + strand, within RR42_RS24480 at 826.719 kb on + strand, within RR42_RS24480 at 826.825 kb on - strand, within RR42_RS24480 at 826.878 kb on + strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.995 kb on + strand at 827.333 kb on + strand, within RR42_RS24485 at 827.368 kb on - strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.466 kb on - strand, within RR42_RS24485 at 827.495 kb on + strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.529 kb on - strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.910 kb on - strand, within RR42_RS24490 at 827.936 kb on + strand, within RR42_RS24490 at 828.053 kb on + strand at 828.053 kb on + strand at 828.058 kb on - strand at 828.058 kb on - strand at 828.112 kb on - strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.136 kb on - strand at 828.267 kb on + strand at 828.323 kb on + strand at 828.324 kb on - strand at 828.324 kb on - strand at 828.325 kb on + strand at 828.325 kb on + strand at 828.357 kb on - strand at 828.357 kb on - strand at 828.626 kb on - strand, within RR42_RS24495 at 828.626 kb on - strand, within RR42_RS24495 at 828.665 kb on + strand, within RR42_RS24495 at 828.665 kb on + strand, within RR42_RS24495 at 828.666 kb on - strand, within RR42_RS24495 at 828.680 kb on + strand, within RR42_RS24495 at 828.828 kb on + strand, within RR42_RS24495 at 828.897 kb on + strand, within RR42_RS24495 at 828.933 kb on + strand, within RR42_RS24495 at 828.933 kb on + strand, within RR42_RS24495
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 826,719 + RR42_RS24480 0.12 +1.2 826,719 + RR42_RS24480 0.12 -1.2 826,825 - RR42_RS24480 0.44 +0.4 826,878 + RR42_RS24480 0.60 -0.1 826,879 - RR42_RS24480 0.60 +1.7 826,879 - RR42_RS24480 0.60 +0.5 826,879 - RR42_RS24480 0.60 +0.7 826,995 + +0.1 827,333 + RR42_RS24485 0.32 +0.8 827,368 - RR42_RS24485 0.40 +0.9 827,403 + RR42_RS24485 0.48 +0.5 827,403 + RR42_RS24485 0.48 +2.3 827,466 - RR42_RS24485 0.62 -0.2 827,495 + RR42_RS24485 0.69 -0.1 827,496 - RR42_RS24485 0.69 +0.2 827,496 - RR42_RS24485 0.69 -0.6 827,496 - RR42_RS24485 0.69 +0.1 827,529 - RR42_RS24485 0.76 +0.0 827,567 + RR42_RS24485 0.85 +0.3 827,567 + RR42_RS24485 0.85 +0.5 827,567 + RR42_RS24485 0.85 +1.2 827,910 - RR42_RS24490 0.63 -0.7 827,936 + RR42_RS24490 0.71 -0.3 828,053 + +0.9 828,053 + -0.0 828,058 - -0.2 828,058 - +0.9 828,112 - +0.9 828,135 + +0.1 828,135 + -2.4 828,135 + +2.2 828,135 + +2.5 828,136 - +1.5 828,267 + -0.9 828,323 + -0.9 828,324 - +0.5 828,324 - +1.0 828,325 + +0.8 828,325 + +0.1 828,357 - +0.1 828,357 - +1.3 828,626 - RR42_RS24495 0.10 -0.4 828,626 - RR42_RS24495 0.10 -0.6 828,665 + RR42_RS24495 0.14 -0.6 828,665 + RR42_RS24495 0.14 +0.6 828,666 - RR42_RS24495 0.14 -1.3 828,680 + RR42_RS24495 0.15 -0.5 828,828 + RR42_RS24495 0.30 +0.5 828,897 + RR42_RS24495 0.37 +0.6 828,933 + RR42_RS24495 0.40 +1.0 828,933 + RR42_RS24495 0.40 -2.2
Or see this region's nucleotide sequence