Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24145 and RR42_RS24150 are separated by 14 nucleotides RR42_RS24150 and RR42_RS24155 are separated by 35 nucleotides RR42_RS24155 and RR42_RS24160 are separated by 68 nucleotides RR42_RS24160 and RR42_RS24165 are separated by 60 nucleotides
RR42_RS24145: RR42_RS24145 - hypothetical protein, at 743,257 to 744,894
_RS24145
RR42_RS24150: RR42_RS24150 - thioesterase, at 744,909 to 745,316
_RS24150
RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494
_RS24155
RR42_RS24160: RR42_RS24160 - hypothetical protein, at 746,563 to 747,075
_RS24160
RR42_RS24165: RR42_RS24165 - gentisate 1,2-dioxygenase, at 747,136 to 748,164
_RS24165
Position (kb) 745
746
747 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 744.378 kb on - strand, within RR42_RS24145 at 744.437 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.745 kb on + strand at 744.746 kb on - strand at 744.887 kb on + strand at 744.888 kb on - strand at 744.888 kb on - strand at 744.914 kb on + strand at 744.915 kb on - strand at 744.919 kb on - strand at 744.919 kb on - strand at 744.924 kb on + strand at 744.985 kb on - strand, within RR42_RS24150 at 744.985 kb on - strand, within RR42_RS24150 at 745.108 kb on + strand at 745.119 kb on - strand, within RR42_RS24150 at 745.132 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.250 kb on - strand, within RR42_RS24150 at 745.336 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.368 kb on + strand at 745.391 kb on + strand at 745.442 kb on + strand at 745.443 kb on - strand at 745.443 kb on - strand at 745.659 kb on + strand, within RR42_RS24155 at 745.681 kb on - strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.883 kb on - strand, within RR42_RS24155 at 745.891 kb on - strand, within RR42_RS24155 at 745.920 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.209 kb on - strand, within RR42_RS24155 at 746.391 kb on - strand at 746.451 kb on + strand at 746.781 kb on + strand, within RR42_RS24160 at 746.803 kb on - strand, within RR42_RS24160 at 746.890 kb on + strand, within RR42_RS24160 at 746.890 kb on + strand, within RR42_RS24160 at 746.891 kb on - strand, within RR42_RS24160 at 746.968 kb on + strand, within RR42_RS24160 at 747.004 kb on + strand, within RR42_RS24160 at 747.012 kb on + strand, within RR42_RS24160 at 747.023 kb on + strand, within RR42_RS24160 at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.073 kb on + strand at 747.074 kb on - strand at 747.074 kb on - strand at 747.281 kb on - strand, within RR42_RS24165 at 747.410 kb on + strand, within RR42_RS24165 at 747.410 kb on + strand, within RR42_RS24165 at 747.490 kb on + strand, within RR42_RS24165 at 747.491 kb on - strand, within RR42_RS24165 at 747.491 kb on - strand, within RR42_RS24165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 744,378 - RR42_RS24145 0.68 -0.0 744,437 - RR42_RS24145 0.72 -0.3 744,608 - RR42_RS24145 0.82 +0.4 744,608 - RR42_RS24145 0.82 +0.1 744,642 + RR42_RS24145 0.85 +1.9 744,642 + RR42_RS24145 0.85 +0.0 744,745 + -1.4 744,746 - -0.4 744,887 + -0.3 744,888 - +1.1 744,888 - +0.1 744,914 + -0.6 744,915 - +1.2 744,919 - +1.3 744,919 - +0.1 744,924 + +0.4 744,985 - RR42_RS24150 0.19 -1.3 744,985 - RR42_RS24150 0.19 -0.6 745,108 + -0.7 745,119 - RR42_RS24150 0.51 -0.8 745,132 - RR42_RS24150 0.55 +0.2 745,136 - RR42_RS24150 0.56 +0.4 745,136 - RR42_RS24150 0.56 -1.1 745,136 - RR42_RS24150 0.56 +1.4 745,250 - RR42_RS24150 0.84 +0.4 745,336 + -0.8 745,363 + +0.4 745,363 + -0.2 745,363 + -0.2 745,368 + -2.1 745,391 + +0.9 745,442 + -1.9 745,443 - -0.0 745,443 - -1.4 745,659 + RR42_RS24155 0.27 +0.3 745,681 - RR42_RS24155 0.29 -0.0 745,689 + RR42_RS24155 0.29 -1.7 745,689 + RR42_RS24155 0.29 +0.6 745,817 + RR42_RS24155 0.41 -0.8 745,817 + RR42_RS24155 0.41 -3.8 745,882 + RR42_RS24155 0.46 -0.3 745,882 + RR42_RS24155 0.46 +0.4 745,882 + RR42_RS24155 0.46 +0.1 745,883 - RR42_RS24155 0.46 -0.1 745,891 - RR42_RS24155 0.47 -1.5 745,920 - RR42_RS24155 0.50 -0.5 746,209 - RR42_RS24155 0.75 +0.2 746,209 - RR42_RS24155 0.75 -0.9 746,209 - RR42_RS24155 0.75 -0.5 746,391 - -0.3 746,451 + -0.8 746,781 + RR42_RS24160 0.42 -0.2 746,803 - RR42_RS24160 0.47 -0.3 746,890 + RR42_RS24160 0.64 +0.5 746,890 + RR42_RS24160 0.64 -0.5 746,891 - RR42_RS24160 0.64 +1.5 746,968 + RR42_RS24160 0.79 -0.8 747,004 + RR42_RS24160 0.86 +1.5 747,012 + RR42_RS24160 0.88 -0.2 747,023 + RR42_RS24160 0.90 -0.4 747,073 + -0.5 747,073 + +0.9 747,073 + +0.4 747,073 + +0.6 747,073 + -1.7 747,074 - -0.1 747,074 - -0.1 747,281 - RR42_RS24165 0.14 +0.4 747,410 + RR42_RS24165 0.27 +0.5 747,410 + RR42_RS24165 0.27 -0.2 747,490 + RR42_RS24165 0.34 -0.1 747,491 - RR42_RS24165 0.34 -0.9 747,491 - RR42_RS24165 0.34 -0.1
Or see this region's nucleotide sequence