Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20395 and RR42_RS20400 are separated by 175 nucleotides RR42_RS20400 and RR42_RS20405 are separated by 47 nucleotides
RR42_RS20395: RR42_RS20395 - membrane protein, at 4,417,130 to 4,418,098
_RS20395
RR42_RS20400: RR42_RS20400 - aldolase, at 4,418,274 to 4,419,038
_RS20400
RR42_RS20405: RR42_RS20405 - 2-dehydropantoate 2-reductase, at 4,419,086 to 4,420,069
_RS20405
Position (kb) 4418
4419
4420 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4417.455 kb on + strand, within RR42_RS20395 at 4417.455 kb on + strand, within RR42_RS20395 at 4417.455 kb on + strand, within RR42_RS20395 at 4417.456 kb on - strand, within RR42_RS20395 at 4417.456 kb on - strand, within RR42_RS20395 at 4417.456 kb on - strand, within RR42_RS20395 at 4417.619 kb on + strand, within RR42_RS20395 at 4417.619 kb on + strand, within RR42_RS20395 at 4417.620 kb on - strand, within RR42_RS20395 at 4417.690 kb on - strand, within RR42_RS20395 at 4417.690 kb on - strand, within RR42_RS20395 at 4417.763 kb on + strand, within RR42_RS20395 at 4417.763 kb on + strand, within RR42_RS20395 at 4417.763 kb on + strand, within RR42_RS20395 at 4417.764 kb on - strand, within RR42_RS20395 at 4417.764 kb on - strand, within RR42_RS20395 at 4417.877 kb on + strand, within RR42_RS20395 at 4417.877 kb on + strand, within RR42_RS20395 at 4418.010 kb on + strand at 4418.011 kb on - strand at 4418.116 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.334 kb on + strand at 4418.373 kb on + strand, within RR42_RS20400 at 4418.373 kb on + strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.803 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.880 kb on - strand, within RR42_RS20400 at 4419.057 kb on - strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.097 kb on - strand at 4419.097 kb on - strand at 4419.282 kb on + strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.533 kb on - strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.719 kb on - strand, within RR42_RS20405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 4,417,455 + RR42_RS20395 0.34 -1.3 4,417,455 + RR42_RS20395 0.34 +0.3 4,417,455 + RR42_RS20395 0.34 -0.2 4,417,456 - RR42_RS20395 0.34 -0.6 4,417,456 - RR42_RS20395 0.34 -0.9 4,417,456 - RR42_RS20395 0.34 +1.4 4,417,619 + RR42_RS20395 0.50 -2.2 4,417,619 + RR42_RS20395 0.50 +1.4 4,417,620 - RR42_RS20395 0.51 -1.5 4,417,690 - RR42_RS20395 0.58 +0.2 4,417,690 - RR42_RS20395 0.58 -0.6 4,417,763 + RR42_RS20395 0.65 +0.9 4,417,763 + RR42_RS20395 0.65 -0.8 4,417,763 + RR42_RS20395 0.65 -1.0 4,417,764 - RR42_RS20395 0.65 -0.4 4,417,764 - RR42_RS20395 0.65 -1.1 4,417,877 + RR42_RS20395 0.77 -1.0 4,417,877 + RR42_RS20395 0.77 -0.0 4,418,010 + +0.6 4,418,011 - -0.6 4,418,116 + -0.1 4,418,192 + +0.5 4,418,192 + +0.3 4,418,192 + -1.0 4,418,334 + +0.2 4,418,373 + RR42_RS20400 0.13 -0.2 4,418,373 + RR42_RS20400 0.13 +1.2 4,418,374 - RR42_RS20400 0.13 +0.8 4,418,374 - RR42_RS20400 0.13 +1.2 4,418,671 - RR42_RS20400 0.52 +0.4 4,418,671 - RR42_RS20400 0.52 -0.5 4,418,701 - RR42_RS20400 0.56 +0.7 4,418,701 - RR42_RS20400 0.56 -0.0 4,418,701 - RR42_RS20400 0.56 +0.6 4,418,720 + RR42_RS20400 0.58 +1.2 4,418,720 + RR42_RS20400 0.58 +1.4 4,418,803 + RR42_RS20400 0.69 +0.9 4,418,879 + RR42_RS20400 0.79 -0.2 4,418,879 + RR42_RS20400 0.79 +0.3 4,418,880 - RR42_RS20400 0.79 +0.4 4,419,057 - -1.0 4,419,096 + +0.0 4,419,096 + +0.7 4,419,096 + +0.3 4,419,097 - +0.5 4,419,097 - +0.8 4,419,282 + RR42_RS20405 0.20 +0.4 4,419,283 - RR42_RS20405 0.20 -1.8 4,419,283 - RR42_RS20405 0.20 +0.6 4,419,283 - RR42_RS20405 0.20 -0.5 4,419,286 + RR42_RS20405 0.20 +0.9 4,419,286 + RR42_RS20405 0.20 -0.8 4,419,533 - RR42_RS20405 0.45 +0.3 4,419,718 + RR42_RS20405 0.64 +1.9 4,419,718 + RR42_RS20405 0.64 -1.6 4,419,719 - RR42_RS20405 0.64 +0.2
Or see this region's nucleotide sequence