Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14365

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14360 and RR42_RS14365 are separated by 127 nucleotidesRR42_RS14365 and RR42_RS14370 overlap by 17 nucleotidesRR42_RS14370 and RR42_RS14375 are separated by 187 nucleotides RR42_RS14360: RR42_RS14360 - tryptophan synthase subunit alpha, at 3,086,924 to 3,088,117 _RS14360 RR42_RS14365: RR42_RS14365 - N-(5'-phosphoribosyl)anthranilate isomerase, at 3,088,245 to 3,088,946 _RS14365 RR42_RS14370: RR42_RS14370 - tRNA pseudouridine synthase A, at 3,088,930 to 3,089,754 _RS14370 RR42_RS14375: RR42_RS14375 - pilus assembly protein FimV, at 3,089,942 to 3,092,824 _RS14375 Position (kb) 3088 3089Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3087.711 kb on + strand, within RR42_RS14360at 3088.017 kb on + strandat 3088.077 kb on + strandat 3088.335 kb on + strand, within RR42_RS14365at 3088.335 kb on + strand, within RR42_RS14365at 3088.710 kb on - strandat 3088.819 kb on + strand, within RR42_RS14365at 3089.797 kb on - strandat 3089.929 kb on + strandat 3089.929 kb on + strandat 3089.929 kb on + strandat 3089.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,087,711 + RR42_RS14360 0.66 -1.4
3,088,017 + -2.4
3,088,077 + -3.3
3,088,335 + RR42_RS14365 0.13 -2.8
3,088,335 + RR42_RS14365 0.13 -2.9
3,088,710 - -0.1
3,088,819 + RR42_RS14365 0.82 -5.3
3,089,797 - +0.5
3,089,929 + -2.1
3,089,929 + -0.3
3,089,929 + -0.3
3,089,930 - -0.3

Or see this region's nucleotide sequence