Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06370

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06365 and RR42_RS06370 are separated by 194 nucleotidesRR42_RS06370 and RR42_RS06375 are separated by 150 nucleotidesRR42_RS06375 and RR42_RS06380 are separated by 277 nucleotides RR42_RS06365: RR42_RS06365 - tRNA(Ile)-lysidine synthetase, at 1,395,751 to 1,397,031 _RS06365 RR42_RS06370: RR42_RS06370 - aspartate kinase, at 1,397,226 to 1,398,476 _RS06370 RR42_RS06375: RR42_RS06375 - tRNA-Ser, at 1,398,627 to 1,398,720 _RS06375 RR42_RS06380: RR42_RS06380 - hypothetical protein, at 1,398,998 to 1,399,390 _RS06380 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1397.084 kb on - strandat 1397.114 kb on + strandat 1397.114 kb on + strandat 1397.115 kb on - strandat 1397.115 kb on - strandat 1398.449 kb on + strandat 1398.449 kb on + strandat 1398.450 kb on - strandat 1398.450 kb on - strandat 1398.450 kb on - strandat 1398.450 kb on - strandat 1398.538 kb on + strandat 1398.722 kb on + strandat 1398.730 kb on + strandat 1398.824 kb on + strandat 1398.824 kb on + strandat 1398.825 kb on - strandat 1398.825 kb on - strandat 1398.856 kb on + strandat 1398.856 kb on + strandat 1399.186 kb on + strand, within RR42_RS06380at 1399.257 kb on + strand, within RR42_RS06380at 1399.257 kb on + strand, within RR42_RS06380at 1399.257 kb on + strand, within RR42_RS06380at 1399.258 kb on - strand, within RR42_RS06380at 1399.400 kb on + strandat 1399.400 kb on + strandat 1399.401 kb on - strandat 1399.401 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
1,397,084 - -0.0
1,397,114 + -0.0
1,397,114 + +0.4
1,397,115 - -0.8
1,397,115 - +1.1
1,398,449 + +1.2
1,398,449 + +0.8
1,398,450 - -0.8
1,398,450 - -4.0
1,398,450 - -3.1
1,398,450 - +0.4
1,398,538 + +0.3
1,398,722 + +0.0
1,398,730 + -1.0
1,398,824 + -1.4
1,398,824 + -1.2
1,398,825 - -0.2
1,398,825 - -0.5
1,398,856 + +0.4
1,398,856 + -0.4
1,399,186 + RR42_RS06380 0.48 +0.7
1,399,257 + RR42_RS06380 0.66 +0.6
1,399,257 + RR42_RS06380 0.66 -0.5
1,399,257 + RR42_RS06380 0.66 -0.1
1,399,258 - RR42_RS06380 0.66 +0.2
1,399,400 + -0.3
1,399,400 + +0.3
1,399,401 - +0.0
1,399,401 - +0.3

Or see this region's nucleotide sequence