Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03650 and RR42_RS03655 are separated by 215 nucleotides RR42_RS03655 and RR42_RS03660 are separated by 66 nucleotides RR42_RS03660 and RR42_RS03665 are separated by 80 nucleotides RR42_RS03665 and RR42_RS03670 are separated by 74 nucleotides
RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331
_RS03650
RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921
_RS03655
RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242
_RS03660
RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544
_RS03665
RR42_RS03670: RR42_RS03670 - isochorismatase, at 812,619 to 812,813
_RS03670
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.055 kb on + strand at 811.056 kb on - strand at 811.071 kb on + strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.286 kb on + strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.290 kb on - strand, within RR42_RS03650 at 811.292 kb on + strand, within RR42_RS03650 at 811.329 kb on + strand at 811.330 kb on - strand at 811.330 kb on - strand at 811.359 kb on - strand at 811.415 kb on - strand at 811.495 kb on - strand at 811.541 kb on + strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.614 kb on - strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.799 kb on + strand, within RR42_RS03655 at 811.800 kb on - strand, within RR42_RS03655 at 811.823 kb on + strand, within RR42_RS03655 at 811.824 kb on - strand, within RR42_RS03655 at 811.989 kb on + strand at 811.990 kb on - strand at 812.094 kb on + strand, within RR42_RS03660 at 812.095 kb on - strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.122 kb on + strand, within RR42_RS03660 at 812.123 kb on - strand, within RR42_RS03660 at 812.189 kb on + strand, within RR42_RS03660 at 812.301 kb on + strand at 812.322 kb on - strand at 812.327 kb on + strand at 812.328 kb on - strand at 812.328 kb on - strand at 812.367 kb on - strand, within RR42_RS03665 at 812.441 kb on + strand, within RR42_RS03665 at 812.498 kb on - strand, within RR42_RS03665 at 812.527 kb on + strand at 812.539 kb on - strand at 812.676 kb on - strand, within RR42_RS03670 at 812.764 kb on + strand, within RR42_RS03670 at 812.765 kb on - strand, within RR42_RS03670 at 812.796 kb on + strand at 812.797 kb on - strand at 812.818 kb on + strand at 812.818 kb on + strand at 812.850 kb on - strand at 812.858 kb on + strand at 812.859 kb on - strand at 813.017 kb on + strand at 813.017 kb on + strand at 813.063 kb on + strand at 813.064 kb on - strand at 813.167 kb on + strand at 813.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 811,055 + +0.0 811,056 - +0.8 811,071 + +0.6 811,072 - -1.5 811,072 - -0.1 811,072 - -0.2 811,072 - -1.2 811,286 + RR42_RS03650 0.84 -0.7 811,287 - RR42_RS03650 0.84 +0.0 811,287 - RR42_RS03650 0.84 -0.9 811,290 - RR42_RS03650 0.85 +0.3 811,292 + RR42_RS03650 0.86 -0.1 811,329 + +1.2 811,330 - +0.2 811,330 - -0.3 811,359 - +0.4 811,415 - -0.5 811,495 - -0.6 811,541 + +1.1 811,542 - -0.2 811,542 - +0.6 811,542 - +1.8 811,542 - +0.1 811,542 - -0.1 811,614 - RR42_RS03655 0.18 +0.1 811,620 + RR42_RS03655 0.19 -2.0 811,620 + RR42_RS03655 0.19 -0.7 811,620 + RR42_RS03655 0.19 +0.5 811,621 - RR42_RS03655 0.20 -0.0 811,621 - RR42_RS03655 0.20 +2.0 811,621 - RR42_RS03655 0.20 +0.4 811,799 + RR42_RS03655 0.67 +0.8 811,800 - RR42_RS03655 0.67 -1.1 811,823 + RR42_RS03655 0.74 +1.0 811,824 - RR42_RS03655 0.74 +1.0 811,989 + -0.9 811,990 - -0.6 812,094 + RR42_RS03660 0.42 +2.5 812,095 - RR42_RS03660 0.42 +0.0 812,105 + RR42_RS03660 0.46 -3.2 812,105 + RR42_RS03660 0.46 +0.5 812,105 + RR42_RS03660 0.46 -0.5 812,106 - RR42_RS03660 0.46 +1.4 812,106 - RR42_RS03660 0.46 +0.4 812,106 - RR42_RS03660 0.46 +1.3 812,106 - RR42_RS03660 0.46 -0.1 812,122 + RR42_RS03660 0.53 -1.4 812,123 - RR42_RS03660 0.53 +1.2 812,189 + RR42_RS03660 0.79 +1.0 812,301 + -1.0 812,322 - +0.2 812,327 + +0.7 812,328 - -0.2 812,328 - -0.8 812,367 - RR42_RS03665 0.20 +0.2 812,441 + RR42_RS03665 0.53 -2.4 812,498 - RR42_RS03665 0.79 -0.5 812,527 + +0.3 812,539 - -0.0 812,676 - RR42_RS03670 0.29 +0.7 812,764 + RR42_RS03670 0.74 +0.3 812,765 - RR42_RS03670 0.75 -0.9 812,796 + -0.9 812,797 - +0.3 812,818 + -0.2 812,818 + +1.5 812,850 - +0.3 812,858 + +0.1 812,859 - -0.5 813,017 + +1.4 813,017 + +0.6 813,063 + -0.3 813,064 - +1.0 813,167 + +0.2 813,168 - +0.3
Or see this region's nucleotide sequence